Query= PF10_0217 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) pre-mRNA
splicing factor, putative
(538 letters)
>FBgn0004587 type=protein;
loc=3R:join(9491190..9491248,9491312..9491623,
9491806..9491970,9492141..9492255); ID=FBpp0099648;
name=B52-PH; parent=FBgn0004587,FBtr0100261;
dbxref=FlyBase_Annotation_IDs:CG10851-PH,
FlyBase:FBpp0099648,GB_protein:AAX52949.1,
GB_protein:AAX52949;
MD5=61b3b5c63517ead718fe7292241779c9; release=r5.1;
species=Dmel; length=216;
Length = 216
Score = 40.0 bits (92), Expect = 8e-08
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 130 MRQCGDVGYANIE---RGKGIVEFVSYDDMLYAIEKFDGAEFKVYDDVTNIKVRRDKRG 185
MRQ G+V YA+ R +G+VEF S DM AIEK D E + I + D+RG
Sbjct: 1 MRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTEL----NGRRIHLVEDRRG 55
Score = 21.9 bits (45), Expect = 0.024
Identities = 9/39 (23%), Positives = 24/39 (61%)
Query: 402 RELKSQDKSNDRLSESKKSYKSQSASVRYNSTEEKKSDD 440
R+ +S+D+S ++S+ +S+SAS + + ++++
Sbjct: 174 RDSRSRDRSASAENKSRSRSRSRSASPKNGNASPDRNNE 212
Score = 21.2 bits (43), Expect = 0.041
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 299 KNKNESSSDVLSKHSSAYRDSDSEKNKSYRKRLSSDNRS 337
K+K++S S S+ RDS S ++ S +RS
Sbjct: 131 KSKSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRS 169
Score = 20.0 bits (40), Expect = 0.090
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 36 GRIKYIDIKPXXXXXXXYAFVHYYDLKDADYAIERRDGYKFDGFRLRVEHSGENRSFGK 94
G + Y D F D+K AIE+ D + +G R+ H E+R G+
Sbjct: 5 GEVTYADAHKQRRNEGVVEFASLSDMKT---AIEKLDDTELNGRRI---HLVEDRRGGR 57
Score = 16.9 bits (32), Expect = 0.77
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 317 RDSDSEKNKSYRKRLSSDNRSH 338
R S S R+R S SH
Sbjct: 70 RSSSSRSRSRSRRRSRSRRSSH 91
Lambda K H
0.310 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 223
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 538
Length of database: 216
Length adjustment: 28
Effective length of query: 510
Effective length of database: 188
Effective search space: 95880
Effective search space used: 95880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.2 bits)
S2: 23 (13.5 bits)