Query= PF10_0225 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding)
orotidine-monophosphate-decarboxylase, putative
(323 letters)
>YGR090W UTP22 SGDID:S000003322, Chr VII from 662362-666075,
Uncharacterized ORF, "Possible U3 snoRNP protein involved
in maturation of pre-18S rRNA, based on computational
analysis of large-scale protein-protein interaction data"
Length = 1237
Score = 28.9 bits (63), Expect = 7e-04
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 159 SDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMA 218
S+ T+ Y G M + + N + F + +P ++ + L +A
Sbjct: 1009 SERLTLAQYKGIQMNFTNLRNSDPNGTHLQFFVASKNDPSGILYSSGIPLPIATRLTALA 1068
Query: 219 QEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYF---PNCYILS 263
+ A+N+ L Q + F G YD + +RT +C ILS
Sbjct: 1069 KVAVNLLQTHGLNQQTINLLFTPGLKDYDFVVDLRTPIGLKSSCGILS 1116
Score = 20.0 bits (40), Expect = 0.32
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 122 VFDYLYELNIPTILDMKINDI-----GNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDI 176
+FD ++NI T + + I G T++ + + + T NI N+ D+
Sbjct: 467 LFDKSTKVNILTKMTVSSYQILKEYAGETLRMLNNVVQDQFSNIFLT-NISRFDNLKYDL 525
Query: 177 CYD 179
CYD
Sbjct: 526 CYD 528
Score = 18.9 bits (37), Expect = 0.72
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 199 SAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLE 231
S IF N+S + Y + L + Y NLE
Sbjct: 508 SNIFLTNISRFDNLKYDLCYDVQLPLGKYNNLE 540
Score = 18.5 bits (36), Expect = 0.94
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 222 LNMSSYLNLEQN 233
LN+SS+ NL+++
Sbjct: 722 LNLSSFFNLKKS 733
Score = 16.5 bits (31), Expect = 3.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 227 YLNLEQNNEFI 237
YLNL+ N I
Sbjct: 1152 YLNLKYKNSLI 1162
Score = 15.8 bits (29), Expect = 6.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 260 YILSPGIGAQNGDLHKTLTNGYHKSYEK 287
+ L GI NG TL + +EK
Sbjct: 189 FALKAGIYQPNGSSIDTLLTMPKELFEK 216
Lambda K H
0.319 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 874
Number of extensions: 53
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 1237
Length adjustment: 37
Effective length of query: 286
Effective length of database: 1200
Effective search space: 343200
Effective search space used: 343200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)