Query= PF10_0264 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) 40S ribosomal
protein, putative
(263 letters)
>YGR214W RPS0A SGDID:S000003446, Chr VII from
920580-920669,921125-921793, Verified ORF, "Protein
component of the small (40S) ribosomal subunit, nearly
identical to Rps0Bp; required for maturation of 18S rRNA
along with Rps0Bp; deletion of either RPS0 gene reduces
growth rate, deletion of both genes is lethal"
Length = 252
Score = 246 bits (628), Expect = 3e-70
Identities = 126/246 (51%), Positives = 171/246 (69%), Gaps = 8/246 (3%)
Query: 12 ESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARIIVAISNPA 71
E +L H+G +N++ + YV+ DGVH+IN+ KT+EKL LAARII AI NP
Sbjct: 12 EDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPE 71
Query: 72 DVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQ 131
DVV +S+R FG RAVLKFA +TGA IAGR+TPG TN I + F EPRL+IVTDPR+DAQ
Sbjct: 72 DVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQ 131
Query: 132 SVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKG-VIPR 190
++KE++Y NIPVIAL D DSP E VD+AIPCNN+GK SI L+++LLA+EVL L+G ++ R
Sbjct: 132 AIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDR 191
Query: 191 SEPWNVMVDMFLWRDPEQFELKNLANEENTPTAPHLIENQYAAEAPYDEWTKKEEWNDNT 250
++PW++M D++ +RDPE+ E + +A E T A + A E +E + EW +
Sbjct: 192 TQPWSIMPDLYFYRDPEEVE-QQVAEEATTEEA----GEEEAKEEVTEEQAEATEWAEEN 246
Query: 251 --NEDW 254
N +W
Sbjct: 247 ADNVEW 252
Lambda K H
0.315 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 234
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 252
Length adjustment: 24
Effective length of query: 239
Effective length of database: 228
Effective search space: 54492
Effective search space used: 54492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)