Query= PF10_0266 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(772 letters)
>YJR002W MPP10 SGDID:S000003762, Chr X from 438780-440561, Verified
ORF, "Component of the SSU processome, which is required
for pre-18S rRNA processing, interacts with and controls
the stability of Imp3p and Imp4p, essential for
viability; similar to human Mpp10p"
Length = 593
Score = 63.2 bits (152), Expect = 4e-14
Identities = 57/288 (19%), Positives = 124/288 (43%), Gaps = 53/288 (18%)
Query: 393 KIEQDIYEINQFDSRLSDNEKDSLSNEFNDNKKTDDVQEK-EKIEKELVAEKHWSLKGEA 451
K++ D++ + + + S N + K+ +++++ E++E E VAEK WSLKGE
Sbjct: 271 KVKLDLFADEEDEPNAEGVGEASDKNLSSFEKQQIEIRKQIEQLENEAVAEKKWSLKGEV 330
Query: 452 YGYNRPKNSILNLNFEIPXXXXXXXXXXXXXXXVGDMENTXXXXXXXEKEYASEDGHXXX 511
+RP++++L E + T E
Sbjct: 331 KAKDRPEDALLTEELEF--------------------DRTAKPVPVITSE---------- 360
Query: 512 XXXXXXXXXXXXXXTLNNEIEIVVKQRIQNMLFDDVEKKTIEDIELEEFNKNDEINFDNL 571
+ +E ++++RIQ+ FDD++++T+ DI + ++ + ++
Sbjct: 361 ---------------VTESLEDMIRRRIQDSNFDDLQRRTLLDITRK--SQRPQFELSDV 403
Query: 572 NFSKSKISLVDEYTQKYQDEIMNSQSKNKENNLQKMEIMNLFKKIMHACDSLSNDYF-XX 630
SKS + ++ + +DE S+ K ++ EI L+ +++ D LS+ +F
Sbjct: 404 KSSKSLAEIYEDDYTRAEDESALSEELQKAHS----EISELYANLVYKLDVLSSVHFVPK 459
Query: 631 XXXXXXXXXXXMATLNIEDSVPMILSDKNKKTAEEIFNPQHMKQQNEL 678
T+++ED+ P+ +S+ + +EI+N ++ E+
Sbjct: 460 PASTSLEIRVETPTISMEDAQPLYMSNASSLAPQEIYNVGKAEKDGEI 507
Score = 20.8 bits (42), Expect = 0.22
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 538 RIQNMLFDDVEKKTIED---IELEEFNKNDEINFDNLNFSKSKISLVDEYTQKYQDEIMN 594
R++N + E+ T ED + K + N N+N + +VD ++ ++N
Sbjct: 508 RLKNGVAMSKEELTREDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLSKAKNITVIN 567
Query: 595 SQSKNKE 601
+ + K+
Sbjct: 568 QKGEKKD 574
Score = 19.6 bits (39), Expect = 0.50
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 58 MDSINIKESNLDAEQLWYLIECLI 81
+D I + LDA Q+W+ ++ ++
Sbjct: 49 LDEITV--DGLDANQVWWQVKLVL 70
Score = 15.8 bits (29), Expect = 7.2
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 19 FDKLGNDNKCSFMENKESLVDMI 41
FD+ E ESL DMI
Sbjct: 347 FDRTAKPVPVITSEVTESLEDMI 369
Lambda K H
0.311 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 874
Number of extensions: 49
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 5
Length of query: 772
Length of database: 593
Length adjustment: 39
Effective length of query: 733
Effective length of database: 554
Effective search space: 406082
Effective search space used: 406082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.5 bits)
S2: 28 (15.4 bits)