Query= PF10_0278 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein, conserved (483 letters)
>YKR081C RPF2 SGDID:S000001789, Chr XI from 592182-591148, reverse
           complement, Verified ORF, "Essential protein involved in
           the processing of pre-rRNA and the assembly of the 60S
           ribosomal subunit; interacts with ribosomal protein L11;
           localizes predominantly to the nucleolus; constituent of
           66S pre-ribosomal particles"
          Length = 344

 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 404 KLQEIGPRFEFTLEENYKTPEYNLFQEALRTVKKQEKTKIKNVHVDEFGHNIKKVYVQKQ 463
           +L EIGPR +F +   + TP  ++  EA +  K+ E    KNV +D  G  + ++++ KQ
Sbjct: 222 ELVEIGPRLDFKIGRIH-TPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQ 280

Query: 464 NFSKLHTKHTKFVKKNKFN 482
           +  KL T+  K + K+KF+
Sbjct: 281 DLGKLQTRKMKGL-KSKFD 298

 Score = 41.2 bits (95), Expect = 6e-08
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 12/188 (6%)

Query: 13  INNEQAKTRKGHLILKKREGVYEESSKYCLFIGSNKRSLILKNFMYDIYSIYKPLTCYMP 72
           I   + K  +    L KRE    E+ K  LFI     +  L + M D+ ++ KP      
Sbjct: 2   IRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKP-----D 56

Query: 73  KAHSNLSNIIDKIDKLVDI---CVHNNCXXXXXXXXXXXXXXRFIIGRLYNNKILDYYVF 129
               N  N I   + +  +      N+C                   R +  KI D  + 
Sbjct: 57  MKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYD--MI 114

Query: 130 SLISYIPLKLFPLSKEILYDT--KPIVLIQGSYFEQNETNRYVKNILFDFFKHKNVDTFS 187
            L+     KL    K++ +    KP+   QG+ F+ +   + +K++  DFF+ ++ D   
Sbjct: 115 ELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174

Query: 188 KKSIQRLI 195
              +Q +I
Sbjct: 175 VAGLQHVI 182

 Score = 15.0 bits (27), Expect = 4.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 431 ALRTVKKQEKTKIKNV 446
           A R + K+E   ++NV
Sbjct: 12  AKRALVKREAKLVENV 27
Lambda     K      H
   0.318    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 21
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 483
Length of database: 344
Length adjustment: 31
Effective length of query: 452
Effective length of database: 313
Effective search space:   141476
Effective search space used:   141476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)