Query= PF10_0278 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein, conserved
(483 letters)
>YKR081C RPF2 SGDID:S000001789, Chr XI from 592182-591148, reverse
complement, Verified ORF, "Essential protein involved in
the processing of pre-rRNA and the assembly of the 60S
ribosomal subunit; interacts with ribosomal protein L11;
localizes predominantly to the nucleolus; constituent of
66S pre-ribosomal particles"
Length = 344
Score = 45.4 bits (106), Expect = 3e-09
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 404 KLQEIGPRFEFTLEENYKTPEYNLFQEALRTVKKQEKTKIKNVHVDEFGHNIKKVYVQKQ 463
+L EIGPR +F + + TP ++ EA + K+ E KNV +D G + ++++ KQ
Sbjct: 222 ELVEIGPRLDFKIGRIH-TPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQ 280
Query: 464 NFSKLHTKHTKFVKKNKFN 482
+ KL T+ K + K+KF+
Sbjct: 281 DLGKLQTRKMKGL-KSKFD 298
Score = 41.2 bits (95), Expect = 6e-08
Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 12/188 (6%)
Query: 13 INNEQAKTRKGHLILKKREGVYEESSKYCLFIGSNKRSLILKNFMYDIYSIYKPLTCYMP 72
I + K + L KRE E+ K LFI + L + M D+ ++ KP
Sbjct: 2 IRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKP-----D 56
Query: 73 KAHSNLSNIIDKIDKLVDI---CVHNNCXXXXXXXXXXXXXXRFIIGRLYNNKILDYYVF 129
N N I + + + N+C R + KI D +
Sbjct: 57 MKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYD--MI 114
Query: 130 SLISYIPLKLFPLSKEILYDT--KPIVLIQGSYFEQNETNRYVKNILFDFFKHKNVDTFS 187
L+ KL K++ + KP+ QG+ F+ + + +K++ DFF+ ++ D
Sbjct: 115 ELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174
Query: 188 KKSIQRLI 195
+Q +I
Sbjct: 175 VAGLQHVI 182
Score = 15.0 bits (27), Expect = 4.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 431 ALRTVKKQEKTKIKNV 446
A R + K+E ++NV
Sbjct: 12 AKRALVKREAKLVENV 27
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 337
Number of extensions: 21
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 483
Length of database: 344
Length adjustment: 31
Effective length of query: 452
Effective length of database: 313
Effective search space: 141476
Effective search space used: 141476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)