Query= PF10_0300 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein, conserved
(257 letters)
>YDL112W TRM3 SGDID:S000002270, Chr IV from 258915-263225, Verified
ORF, "2'-O-ribose methyltransferase, catalyzes the ribose
methylation of the guanosine nucleotide at position 18 of
tRNAs"
Length = 1436
Score = 37.4 bits (85), Expect = 2e-06
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 5/160 (3%)
Query: 42 KLKKDSYEKIKTYVVIYNIGKKKNVGCIVRSCVAFNVHKIFIVGKRKKEINFFGNMG-TY 100
K D + + VV + K N+G I R C V + + + K F N+ T
Sbjct: 1275 KKSNDVVTRSELIVVSSLVDKPPNLGGICRLCDVLGVGLLTVQDIKVKNHPQFKNVAVTA 1334
Query: 101 D-YITIEY--FDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTG 157
D ++ +E D I + K L E + ++ + N K + L G E G
Sbjct: 1335 DRWMPMEEVALDEIASFMKEKKKEGYTLIGLEQTDKSVKLDNNFQFPKKSLILLGTEAFG 1394
Query: 158 IHDNVLKICDKIIYIPQYGKGTASLNVSVSCAIILQNFAV 197
I +L D + I Q+G S+N+ + A+I+ ++ V
Sbjct: 1395 IPGTLLSELDLCLEIQQFGV-IRSMNIQTATAVIVHSYTV 1433
Score = 15.8 bits (29), Expect = 5.5
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 107 YFDNIYELKEYLTKHDILLYACEISVNALSITTNPYEHKDTAFLFGNEGTGIHDNVLKIC 166
+FD+ E + KH+ + ++ LS+ + + +LF GI C
Sbjct: 135 FFDSFAEEQNANIKHE------NLHLDILSL----LHYLEVVYLFDECKNGISSK----C 180
Query: 167 DKIIYIPQYGKGTASLNVSVSCAIILQ 193
I +P G S ++ SC+ +++
Sbjct: 181 LDFIIVPLL--GCNSEEIADSCSKLMR 205
Score = 15.0 bits (27), Expect = 9.3
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 231 LKQIHFKRSLRSQKKKEN 248
+KQ++ + S ++ K+K +
Sbjct: 229 IKQLYAEGSQQAWKQKNS 246
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 861
Number of extensions: 40
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 1436
Length adjustment: 37
Effective length of query: 220
Effective length of database: 1399
Effective search space: 307780
Effective search space used: 307780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)