Query= PF10_0310 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein (904 letters)
>YHR156C LIN1 SGDID:S000001199, Chr VIII from 412409-411387, reverse
           complement, Verified ORF, "Non-essential component of U5
           snRNP; nuclear protein; physically interacts with Irr1p
           of cohesin complex; may link together proteins involved
           in chromosome segregation, mRNA splicing and DNA
           replication"
          Length = 340

 Score = 58.5 bits (140), Expect = 6e-13
 Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 21/161 (13%)

Query: 310 SKDYFGYDIEPFNMKNELTQGYIDKDGNYI--YNESDNDEVE-EAWLKSVDEQDPLSTFS 366
           SK   G +IEPFN+ +E+  G  DKDGNYI   N ++ND+ + E W+      D ++T  
Sbjct: 115 SKVEKGVNIEPFNIDDEIKHGVFDKDGNYIKTENATENDQQDNEEWM-----NDVINTEE 169

Query: 367 NNTLQAQKFQETQSKFHMTYDKLNNNILSINIFDALYSLSCLLIDEKETPIKAMIRYKND 426
            N L+ ++  +TQ+  H              + +AL  L   L+DE ET ++++ R    
Sbjct: 170 VNRLEKEQSVKTQNSRHYM------------VHEALNLLKFFLVDENETVLESLGRLNKL 217

Query: 427 LKVCKNYLNQ-YESKIDKINSLSINSNAEQKIQSTEEHEQN 466
            K+  +  N+  +  I  I  LS   N  +K   +E +E N
Sbjct: 218 RKIAISKKNKSLKYVIHGIELLSDLINILEKKGFSEVYEYN 258

 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 32/165 (19%)

Query: 422 RYKNDLKVCKNYLNQ---YESKIDKINSLSINSNAEQKIQSTEEHEQNGETLQTDSVGKK 478
           R ++D K+     NQ   YE   ++++    +S+++  ++ + ++E +G+ +   S  K 
Sbjct: 18  RREHDEKLSDELHNQSTIYED--EELSRAEYDSDSDSSVEDSTDNENSGKEMDEKSYEKN 75

Query: 479 --NLLQVRIRAKSSIQ------HGEENL-----NVVKKNDEVEKNDEVEK---NDEVE-- 520
             ++   R R KS IQ        +ENL      +     +VEK   +E    +DE++  
Sbjct: 76  EDHVEDHRKRKKSKIQLLDIAEFKKENLADLDYQIGNSESKVEKGVNIEPFNIDDEIKHG 135

Query: 521 ---------KNDEVEKNDEVEKNDEVEKNDEVEKNDEVEKNDEVE 556
                    K +   +ND+ +  + +      E+ + +EK   V+
Sbjct: 136 VFDKDGNYIKTENATENDQQDNEEWMNDVINTEEVNRLEKEQSVK 180

 Score = 26.9 bits (58), Expect = 0.002
 Identities = 16/97 (16%), Positives = 48/97 (49%), Gaps = 2/97 (2%)

Query: 497 NLNVVKKNDEVEKNDEVEKNDEVEKNDEVEKNDEVEKND-EVEKNDEVEKNDEVEKNDEV 555
           N + +K+N +  ++DE + +DE+     + +++E+ + + + + +  VE + + E + + 
Sbjct: 8   NSSKLKRNSDRREHDE-KLSDELHNQSTIYEDEELSRAEYDSDSDSSVEDSTDNENSGKE 66

Query: 556 ERNDEVERNDMAERNDMSERNDMAERNDMAEKNNDDV 592
                 E+N+    +    +    +  D+AE   +++
Sbjct: 67  MDEKSYEKNEDHVEDHRKRKKSKIQLLDIAEFKKENL 103

 Score = 17.7 bits (34), Expect = 1.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 352 WLKSVDEQDPLST-FSNNTLQAQKFQETQ-SKFHMTYDKLNN 391
           WL  +DE   L T +  +  Q   F+ +   KFH   D+  N
Sbjct: 289 WLNKLDEYHGLYTNYEMSYWQKSYFKNSVIVKFHSEPDRDEN 330
Lambda     K      H
   0.310    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 952
Number of extensions: 63
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 904
Length of database: 340
Length adjustment: 36
Effective length of query: 868
Effective length of database: 304
Effective search space:   263872
Effective search space used:   263872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.0 bits)
S2: 27 (15.0 bits)