Query= PF10_0310 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(904 letters)
>YHR156C LIN1 SGDID:S000001199, Chr VIII from 412409-411387, reverse
complement, Verified ORF, "Non-essential component of U5
snRNP; nuclear protein; physically interacts with Irr1p
of cohesin complex; may link together proteins involved
in chromosome segregation, mRNA splicing and DNA
replication"
Length = 340
Score = 58.5 bits (140), Expect = 6e-13
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 21/161 (13%)
Query: 310 SKDYFGYDIEPFNMKNELTQGYIDKDGNYI--YNESDNDEVE-EAWLKSVDEQDPLSTFS 366
SK G +IEPFN+ +E+ G DKDGNYI N ++ND+ + E W+ D ++T
Sbjct: 115 SKVEKGVNIEPFNIDDEIKHGVFDKDGNYIKTENATENDQQDNEEWM-----NDVINTEE 169
Query: 367 NNTLQAQKFQETQSKFHMTYDKLNNNILSINIFDALYSLSCLLIDEKETPIKAMIRYKND 426
N L+ ++ +TQ+ H + +AL L L+DE ET ++++ R
Sbjct: 170 VNRLEKEQSVKTQNSRHYM------------VHEALNLLKFFLVDENETVLESLGRLNKL 217
Query: 427 LKVCKNYLNQ-YESKIDKINSLSINSNAEQKIQSTEEHEQN 466
K+ + N+ + I I LS N +K +E +E N
Sbjct: 218 RKIAISKKNKSLKYVIHGIELLSDLINILEKKGFSEVYEYN 258
Score = 28.5 bits (62), Expect = 7e-04
Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 32/165 (19%)
Query: 422 RYKNDLKVCKNYLNQ---YESKIDKINSLSINSNAEQKIQSTEEHEQNGETLQTDSVGKK 478
R ++D K+ NQ YE ++++ +S+++ ++ + ++E +G+ + S K
Sbjct: 18 RREHDEKLSDELHNQSTIYED--EELSRAEYDSDSDSSVEDSTDNENSGKEMDEKSYEKN 75
Query: 479 --NLLQVRIRAKSSIQ------HGEENL-----NVVKKNDEVEKNDEVEK---NDEVE-- 520
++ R R KS IQ +ENL + +VEK +E +DE++
Sbjct: 76 EDHVEDHRKRKKSKIQLLDIAEFKKENLADLDYQIGNSESKVEKGVNIEPFNIDDEIKHG 135
Query: 521 ---------KNDEVEKNDEVEKNDEVEKNDEVEKNDEVEKNDEVE 556
K + +ND+ + + + E+ + +EK V+
Sbjct: 136 VFDKDGNYIKTENATENDQQDNEEWMNDVINTEEVNRLEKEQSVK 180
Score = 26.9 bits (58), Expect = 0.002
Identities = 16/97 (16%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 497 NLNVVKKNDEVEKNDEVEKNDEVEKNDEVEKNDEVEKND-EVEKNDEVEKNDEVEKNDEV 555
N + +K+N + ++DE + +DE+ + +++E+ + + + + + VE + + E + +
Sbjct: 8 NSSKLKRNSDRREHDE-KLSDELHNQSTIYEDEELSRAEYDSDSDSSVEDSTDNENSGKE 66
Query: 556 ERNDEVERNDMAERNDMSERNDMAERNDMAEKNNDDV 592
E+N+ + + + D+AE +++
Sbjct: 67 MDEKSYEKNEDHVEDHRKRKKSKIQLLDIAEFKKENL 103
Score = 17.7 bits (34), Expect = 1.2
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 352 WLKSVDEQDPLST-FSNNTLQAQKFQETQ-SKFHMTYDKLNN 391
WL +DE L T + + Q F+ + KFH D+ N
Sbjct: 289 WLNKLDEYHGLYTNYEMSYWQKSYFKNSVIVKFHSEPDRDEN 330
Lambda K H
0.310 0.130 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 952
Number of extensions: 63
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 904
Length of database: 340
Length adjustment: 36
Effective length of query: 868
Effective length of database: 304
Effective search space: 263872
Effective search space used: 263872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.0 bits)
S2: 27 (15.0 bits)