Query= PF11_0051 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) phenylalanine
-- tRNA ligase, putative
(623 letters)
>YLR060W FRS1 SGDID:S000004050, Chr XII from 260980-262767, Verified
ORF, "Beta subunit of cytoplasmic phenylalanyl-tRNA
synthetase, forms a tetramer with Frs2p to generate the
active enzyme; evolutionarily distant from mitochondrial
phenylalanyl-tRNA synthetase based on protein sequence,
but substrate binding is similar"
Length = 595
Score = 304 bits (779), Expect = 6e-87
Identities = 191/635 (30%), Positives = 323/635 (50%), Gaps = 57/635 (8%)
Query: 1 MPTISVYEDDXXXXXXXXXXXXXXXDVCFDFGLEVDDIEYKNDKKI-----YKIEVPANR 55
MPT+SV + ++CF+FG+E+D+ + K K+++ ANR
Sbjct: 1 MPTVSVNKQQLFDLLGKNYTSQEFDELCFEFGMEMDEDTTEEALKTGEEPELKLDISANR 60
Query: 56 YDLICVEGLCRALKNFMCKFDDIKYDISMNNYDICIKGNQYIKVDGSVDDRRGYVVCCVL 115
YDL+C+EG+ ++L ++ + + Y +S K + +D S + R + VL
Sbjct: 61 YDLLCIEGISQSLNEYLERKERPDYKLS--------KPTTKLIIDKSTEQIRPFATAAVL 112
Query: 116 KNMNINDSVYNNIIEIQEKLHHNLGKKRSVLAIGIHDYDKIKFPLKYKFEKKEKINFIPL 175
+N+ +N+ Y + I +Q+KLH NL + RS++A+G HD D I+ P Y+ + I F+PL
Sbjct: 113 RNIKLNEKSYASFIALQDKLHANLCRNRSLVAMGTHDLDSIEGPFHYRALPPKDIKFVPL 172
Query: 176 NEKTNLNGMNLIDFY---SKNLNLKPYLKIIKDFDKYPIIVDSNEQILSLPPIINCDHTK 232
N+ G LI+FY + N+ Y+ II+D +P+I+DS +++ SLPP+IN +H+K
Sbjct: 173 NQTQEFTGDKLIEFYKSPEQKNNIGRYVHIIEDSPVFPVIMDSKDRVCSLPPLINSEHSK 232
Query: 233 ISLNTKNVFIECTAIDRNKAQIALNILCSMLSEYCVPKYSIQSFVVIYENQDFSDDQNLK 292
IS+NT+N+ I+ TA D+ KA+I LNIL +M S YC ++++ ++ E+ S
Sbjct: 233 ISVNTRNILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSEHNGQSR----- 287
Query: 293 KKETQFLYPIFENKSLTCNIDYVRKLSGISHITVHEVNNLLKRMMLSC--DIMDNNTFKV 350
L P F ++ + +I Y+ G+ + E+ + LK+M L D + V
Sbjct: 288 ------LAPNFNDRIMDVSIKYINSCLGLDQ-SADEIAHCLKKMSLHAVQSKEDKDILHV 340
Query: 351 TIPFYRSDIMHCCDIIEDIAIAYGYGNI-KYEPPQ----ICKKHSLNNCSELFRNVLVEC 405
IP R DI+H CDI+ED A+ YG+ N+ K E I K +N S++FR +
Sbjct: 341 DIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLPINKVSDIFRVASSQA 400
Query: 406 GYTEVMTNALLSRDENYNCMLRTHKSYDDPNINLDEYNPLAAPIQIKNSKTSEYEIIRTS 465
+ EV+ L S DEN+ LR + D +++ N KT EY+++RT+
Sbjct: 401 TWVEVLPLTLCSHDENFK-FLRQSDNGD-------------LAVKLANPKTLEYQVVRTT 446
Query: 466 LIVNLLKFVSANKHRELPLRFFEIGDVSYATYNQTDTNAVNKKYLSIIFSDKFTAGLEEL 525
L+ +LK V N+ LP++ FE GDV + ++ + A N+++ + I+ K +G E +
Sbjct: 447 LLPGILKTVKENRKHSLPIKVFETGDVVFKD-DKLERKAYNERHWAAIYVGK-NSGFEII 504
Query: 526 HGVLEAILKEY--QLFSDYKIXXXXXXNISIRSDMYYKLIPKEDPSFLNERIVDIVLFPH 583
G+L I++ + + +DY D P +
Sbjct: 505 QGLLGKIMQTFRTEWIADYGAAASGRGYWIEEDDSVKTYFPGRGAKVMFRSKEG----AE 560
Query: 584 NLKFGVLGIIHPKVLENFSLDIPVSAIEINVETLL 618
+ G LG++HP+V+ NF + S +E+N E L
Sbjct: 561 PKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Lambda K H
0.322 0.140 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 964
Number of extensions: 58
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 623
Length of database: 595
Length adjustment: 37
Effective length of query: 586
Effective length of database: 558
Effective search space: 326988
Effective search space used: 326988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.4 bits)
S2: 27 (15.0 bits)