Query= PF11_0065 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal protein S4, putative (282 letters)
>FBgn0011284 type=protein;
           loc=3L:join(13035112..13035114,13035210..13035468,
           13035542..13035639,13036266..13036437,
           13036674..13036927); ID=FBpp0075619; name=RpS4-PB;
           parent=FBgn0011284,FBtr0075885;
           dbxref=FlyBase:FBpp0075619,
           FlyBase_Annotation_IDs:CG11276-PB,GB_protein:AAF49846.1,
           GB_protein:AAF49846;
           MD5=9432bd09df680f6871c732d2390f7b76; release=r5.1;
           species=Dmel; length=261;
          Length = 261

 Score =  306 bits (785), Expect = 2e-88
 Identities = 146/256 (57%), Positives = 197/256 (76%)

Query: 24  KGIKKHLKRVNAPSHWMLNKMGGQYAPKTSSGPHKLLESIPLVILLRNRLKYALTFDEVK 83
           +G KKHLKR+ AP  WML+K+GG +AP+ S+GPHKL ES+PL+I LRNRLKYAL   EV 
Sbjct: 3   RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT 62

Query: 84  MILIQKIVKVDNKVRTDCTFPVGLMDVIHITKSNEYFRLLYDIKGRFVPHRITNEESKYK 143
            I++Q++VKVD KVRTD T+P G MDVI + K+ E+FRL+YD+KGRFV HRI+ EE+KYK
Sbjct: 63  KIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYK 122

Query: 144 LCKVKKILLRKGRLSIAVTHDGRSIPYIHPDVKVNDTVRLDLETGKVLEHLKFQVGSLVM 203
           LCKVKK  L    +   VTHDGR+I Y  P +  ND+V++D+ +GK+ +++KF  G+L M
Sbjct: 123 LCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCM 182

Query: 204 VTAGHSVGRVGVISSIDKNMGTYDIIHVKDSRNKVFATRLSNVFVIGDNTKPYISLPREK 263
           +T G ++GRVG + + +++ G++DI+H+KDS+  VFATRL+NVF+IG   KPYISLP+ K
Sbjct: 183 ITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGK 242

Query: 264 GIKLDIIEERRNRLKA 279
           G+KL I EER  RL A
Sbjct: 243 GVKLSIAEERDKRLAA 258

 Score = 15.8 bits (29), Expect = 1.1
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 5/21 (23%)

Query: 23  GKGIKKHL-----KRVNAPSH 38
           GKG+K  +     KR+ A +H
Sbjct: 241 GKGVKLSIAEERDKRLAAKTH 261
Lambda     K      H
   0.322    0.140    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 278
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 261
Length adjustment: 25
Effective length of query: 257
Effective length of database: 236
Effective search space:    60652
Effective search space used:    60652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)