Query= PF11_0065 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein S4, putative
(282 letters)
>FBgn0011284 type=protein;
loc=3L:join(13035112..13035114,13035210..13035468,
13035542..13035639,13036266..13036437,
13036674..13036927); ID=FBpp0075619; name=RpS4-PB;
parent=FBgn0011284,FBtr0075885;
dbxref=FlyBase:FBpp0075619,
FlyBase_Annotation_IDs:CG11276-PB,GB_protein:AAF49846.1,
GB_protein:AAF49846;
MD5=9432bd09df680f6871c732d2390f7b76; release=r5.1;
species=Dmel; length=261;
Length = 261
Score = 306 bits (785), Expect = 2e-88
Identities = 146/256 (57%), Positives = 197/256 (76%)
Query: 24 KGIKKHLKRVNAPSHWMLNKMGGQYAPKTSSGPHKLLESIPLVILLRNRLKYALTFDEVK 83
+G KKHLKR+ AP WML+K+GG +AP+ S+GPHKL ES+PL+I LRNRLKYAL EV
Sbjct: 3 RGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVT 62
Query: 84 MILIQKIVKVDNKVRTDCTFPVGLMDVIHITKSNEYFRLLYDIKGRFVPHRITNEESKYK 143
I++Q++VKVD KVRTD T+P G MDVI + K+ E+FRL+YD+KGRFV HRI+ EE+KYK
Sbjct: 63 KIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYK 122
Query: 144 LCKVKKILLRKGRLSIAVTHDGRSIPYIHPDVKVNDTVRLDLETGKVLEHLKFQVGSLVM 203
LCKVKK L + VTHDGR+I Y P + ND+V++D+ +GK+ +++KF G+L M
Sbjct: 123 LCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCM 182
Query: 204 VTAGHSVGRVGVISSIDKNMGTYDIIHVKDSRNKVFATRLSNVFVIGDNTKPYISLPREK 263
+T G ++GRVG + + +++ G++DI+H+KDS+ VFATRL+NVF+IG KPYISLP+ K
Sbjct: 183 ITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGK 242
Query: 264 GIKLDIIEERRNRLKA 279
G+KL I EER RL A
Sbjct: 243 GVKLSIAEERDKRLAA 258
Score = 15.8 bits (29), Expect = 1.1
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 23 GKGIKKHL-----KRVNAPSH 38
GKG+K + KR+ A +H
Sbjct: 241 GKGVKLSIAEERDKRLAAKTH 261
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 278
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 261
Length adjustment: 25
Effective length of query: 257
Effective length of database: 236
Effective search space: 60652
Effective search space used: 60652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)