Query= PF11_0065 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) ribosomal
protein S4, putative
(282 letters)
>YJR145C RPS4A SGDID:S000003906, Chr X from
702984-702971,702714-701943, reverse complement,
Verified ORF, "Protein component of the small (40S)
ribosomal subunit; mutation affects 20S pre-rRNA
processing; identical to Rps4Bp and has similarity to
rat S4 ribosomal protein"
Length = 261
Score = 308 bits (788), Expect = 1e-88
Identities = 148/253 (58%), Positives = 192/253 (75%)
Query: 24 KGIKKHLKRVNAPSHWMLNKMGGQYAPKTSSGPHKLLESIPLVILLRNRLKYALTFDEVK 83
+G KKHLKR+ AP HW+L+K+ G YAP+ S+GPHKL ES+PL++ LRNRLKYAL EVK
Sbjct: 3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVK 62
Query: 84 MILIQKIVKVDNKVRTDCTFPVGLMDVIHITKSNEYFRLLYDIKGRFVPHRITNEESKYK 143
IL+Q+ VKVD KVRTD T+P G MDVI + +NE FRL+YD+KGRF HRIT+EE+ YK
Sbjct: 63 AILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYK 122
Query: 144 LCKVKKILLRKGRLSIAVTHDGRSIPYIHPDVKVNDTVRLDLETGKVLEHLKFQVGSLVM 203
L KVKK+ L K + VTHDGR+I Y P++KVNDTV++DL +GK+ + +KF G LV
Sbjct: 123 LGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVY 182
Query: 204 VTAGHSVGRVGVISSIDKNMGTYDIIHVKDSRNKVFATRLSNVFVIGDNTKPYISLPREK 263
VT G ++GR+G I +++ G +D++H+KDS + F TRL+NVFVIG+ KPYISLP+ K
Sbjct: 183 VTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGK 242
Query: 264 GIKLDIIEERRNR 276
GIKL I EER R
Sbjct: 243 GIKLSIAEERDRR 255
Score = 14.6 bits (26), Expect = 2.4
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 23 GKGIK 27
GKGIK
Sbjct: 241 GKGIK 245
Lambda K H
0.322 0.140 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 278
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 261
Length adjustment: 25
Effective length of query: 257
Effective length of database: 236
Effective search space: 60652
Effective search space used: 60652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)