>FBgn0030354 type=protein;
           loc=X:complement(11795271..11795312,11795382..11798714,
           11798777..11798944); ID=FBpp0073433; name=Upf1-PA;
           parent=FBgn0030354,FBtr0073596;
           dbxref=FlyBase:FBpp0073433,
           FlyBase_Annotation_IDs:CG1559-PA,GB_protein:AAF48115.2,
           GB_protein:AAF48115;
           MD5=0d1c3b90f9acbb265f6b829c72b870e6; release=r5.1;
           species=Dmel; length=1180;
          Length = 1180

 Score = 79.3 bits (194), Expect = 1e-18
 Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 901 TPYSKQTNLLRNIFYDNIYNDQHYLSTYKNIEISTVDSFQGREKEIVVFSLVCSNYFKNI 960
           TPY  Q   L        Y    +   Y+ IEI++VD+FQGREK+I++ S V SN  + I
Sbjct: 774 TPYEGQRAYLVQYMQ---YQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGI 830

Query: 961 GFLKDYRRLNVAVTRAKRHLVIVGNSNTISNDDVLNQL 998
           GFL D RRLNVA+TRAK  ++IVGN   ++   + N L
Sbjct: 831 GFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHL 868

 Score = 64.7 bits (156), Expect = 4e-14
 Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 518 LINKNNVIFSTCSSTSNYELNKFVKFSNFLFDAVCIDECCQCTEPLCYIPISLSKKNVFL 577
           L+   +VI  TC    +  L++ VKF++ L     IDE  Q TEP C +P+ L  K + L
Sbjct: 587 LLEAADVICCTCVGAGDGRLSR-VKFTSIL-----IDESMQSTEPECMVPVVLGAKQLIL 640

Query: 578 FGDHKQLSPLIKYNK-HKNKLNITLFERLINKHKQNISFLLNTQYRMNNLILLWSNKIFY 636
            GDH QL P++   K  +  L+ +LFERL+    +   F L  QYRM+  +  + +  FY
Sbjct: 641 VGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIR--PFRLEVQYRMHPELSQFPSNFFY 698

Query: 637 EQKL 640
           E  L
Sbjct: 699 EGSL 702

 Score = 49.7 bits (117), Expect = 1e-09
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 353 IKNLNINQKKAVYSCIFSNDIFCIHGPPGTGKTTVLCELIYQLIQ-RNYKILVTGPSNVS 411
           + +LN +Q  AV   +    +  I GPPGTGKT     ++YQL++     +LV  PSN +
Sbjct: 449 LPDLNRSQVYAVKHAL-QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTA 507

Query: 412 VDNILRKCVEDLNIKNVVRIGIKSK 436
           VD +  K +   N+K VVR+  KS+
Sbjct: 508 VDQLTEK-IHRTNLK-VVRVCAKSR 530

 Score = 18.1 bits (35), Expect = 4.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 89  LDNFPQHMFSKGSI 102
           L  FP + F +GS+
Sbjct: 689 LSQFPSNFFYEGSL 702

 Score = 16.9 bits (32), Expect = 8.9
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 446 YDEKIKE 452
           YD+K+KE
Sbjct: 293 YDQKLKE 299

Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1940
Number of extensions: 87
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 5
Length of query: 1024
Length of database: 1180
Length adjustment: 46
Effective length of query: 978
Effective length of database: 1134
Effective search space:  1109052
Effective search space used:  1109052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 32 (17.5 bits)
S2: 32 (16.9 bits)