Query= PF11_0087 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) Rad51 homolog,
putative
(366 letters)
>YER095W RAD51 SGDID:S000000897, Chr V from 349976-351178, Verified
ORF, "Strand exchange protein, forms a helical filament
with DNA that searches for homology; involved in the
recombinational repair of double-strand breaks in DNA
during vegetative growth and meiosis; homolog of Dmc1p
and bacterial RecA protein"
Length = 400
Score = 374 bits (959), Expect = e-108
Identities = 187/330 (56%), Positives = 233/330 (70%)
Query: 37 DEIEEEQLYTGPLKIEQLLAKGFVKRDLELLKEGGLQTVECVAYAPMRTLCAIKGISEQX 96
DE +E + IE+L G D++ L+E GL T E VAYAP + L IKGISE
Sbjct: 69 DEAYDEAALGSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAK 128
Query: 97 XXXXXXXXXXXXNSGFCNAIDYHDARQNLIKFTTGSKQLDALLKGGIETGGITELFGEFR 156
GF A D+H R LI TTGSK LD LL GG+ETG ITELFGEFR
Sbjct: 129 ADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFR 188
Query: 157 TGKSQLCHTLAITCQLPIEQSGGEGKCLWIDTEGTFRPERIVAIAKRYGLHPTDCLNNIA 216
TGKSQLCHTLA+TCQ+P++ GGEGKCL+IDTEGTFRP R+V+IA+R+GL P D LNN+A
Sbjct: 189 TGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVA 248
Query: 217 YAKAYNCDHQTELLIDASAMMADARFALLIVDSATALYRSEYIGRGELANRQSHLCRFLR 276
YA+AYN DHQ LL A+ MM+++RF+L++VDS ALYR+++ GRGEL+ RQ HL +F+R
Sbjct: 249 YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMR 308
Query: 277 GLQRIADIYGVAVIITNQVVAKVDAMSMFGGHEKIPIGGNIIAHASQTRLYLRKGRGESR 336
LQR+AD +GVAV++TNQVVA+VD F K PIGGNI+AH+S TRL +KG+G R
Sbjct: 309 ALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAHSSTTRLGFKKGKGCQR 368
Query: 337 ICKIYDSPVLPEGEAVFAITEGGIADYEEK 366
+CK+ DSP LPE E VFAI E G+ D E+
Sbjct: 369 LCKVVDSPCLPEAECVFAIYEDGVGDPREE 398
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 419
Number of extensions: 16
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 400
Length adjustment: 30
Effective length of query: 336
Effective length of database: 370
Effective search space: 124320
Effective search space used: 124320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)