Query= PF11_0090 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical
protein
(643 letters)
>YGR103W NOP7 SGDID:S000003335, Chr VII from 695421-697238, Verified
ORF, "Nucleolar protein involved in rRNA processing and
60S ribosomal subunit biogenesis; constituent of several
different pre-ribosomal particles"
Length = 605
Score = 200 bits (508), Expect = 2e-55
Identities = 160/628 (25%), Positives = 283/628 (45%), Gaps = 96/628 (15%)
Query: 25 LRKLFLNEEEFRKLCIFKGIYPKDFKEIPLKYRKKFYKHKVFYTRNDFLKLSHEKIINDF 84
+RKL ++ +FR+LCIFKGIYP++ + K K FY D L HE ++ F
Sbjct: 22 VRKLQVSLADFRRLCIFKGIYPREPRN-KKKANKGSTAPTTFYYAKDIQYLMHEPVLAKF 80
Query: 85 RXXXXXXXXXXXXXXTLEDFTRSKNIVANFPVYKLEHIIKERYPILSYAVDHLDDALSCI 144
R E + +K + N Y L+HIIKERYP A+ +DDAL+ +
Sbjct: 81 REHKTFARKLTRALGRGE-VSSAKRLEENRDSYTLDHIIKERYPSFPDAIRDIDDALNML 139
Query: 145 IAYSQLPSNHKYGIKNNMVKTCEMLKDHFHYYVYKTNRIKKAFISVKGYYLQAEILKKKV 204
+S LPS ++ + + ++ + + + + YV K ++K F+S+KG Y QA I ++V
Sbjct: 140 FLFSNLPSTNQ--VSSKIINDAQKICNQWLAYVAKERLVRKVFVSIKGVYYQANIKGEEV 197
Query: 205 TWIIPHIFTPYLDTSIDFKLISDFIEYYIAXXXXXXXXXXXXDNMLYPPKQDNDLKNEKL 264
W++P F + + +DF+++ F+E+Y ++YPPK DLK +K+
Sbjct: 198 RWLVPFKFPENIPSDVDFRIMLTFLEFYSTLLHFVLYKLYTDSGLIYPPKL--DLKKDKI 255
Query: 265 ---------------AHLSYDKDYSTNENNIDINMNQELQSKCN---VNTNE-DLNTCQE 305
+ L D + ++ L+S N NT+E + QE
Sbjct: 256 ISGLSSYILESRQEDSLLKLDPTEIEEDVKVESLDASTLKSALNADEANTDETEKEEEQE 315
Query: 306 KTKEKNHKSDNNPHEXXXXXXXXXXXXXXXXXXCDLNKNEGKNLTNNIIHKNSEADNGHV 365
K +EK + + N D NKN+G +I+ + S+ D
Sbjct: 316 KKQEKEQEKEQNEETELDTFE-------------DNNKNKG-----DILIQPSKYD---- 353
Query: 366 HPDDHIDIDEHNKLKELFKNHIFYIHNDMPFDVLSIIILSCGGKISWNSRISPIH----Y 421
+ + LF +FY+ ++P D+L +ILSCGG + + + I
Sbjct: 354 -----------SPVASLFSAFVFYVSREVPIDILEFLILSCGGNVISEAAMDQIENKKDI 402
Query: 422 DDNNITHEIYEKD--KNTIHLNNPENEYKRIHIQPQYIFDCLNEKNILPCSDYLTEKENL 479
D + +TH+I ++ KN + R +IQPQ+IFDC+N+ ++P + YL E L
Sbjct: 403 DMSKVTHQIVDRPVLKNKV--------AGRTYIQPQWIFDCINKGELVPANKYL-PGEAL 453
Query: 480 PVHLSPFIEDENFKNLVKKEEYTINKMLNQKIKEEQYKDFSKENNNIFKSPNYKXXXXXX 539
P HLSP+ + + EE EE+ + E+ + + + +
Sbjct: 454 PPHLSPWGDAIGYDPTAPVEE-----------GEEEESESESESEDQVEEEDQEVVAGEE 502
Query: 540 NDDRETANLILNNKRQAALNNQLERENEDINQLKENDTILNKQTDQTQILKTQNLKSQEQ 599
+DD + + QA +LE + ++ E D +NK + K + + +E+
Sbjct: 503 DDDDD-------EELQAQKELELEAQGIKYSETSEADKDVNKSKN-----KKRKVDEEEE 550
Query: 600 EIQRHKIVLSKKKRKLFARIDMAQKRQK 627
E + I++S K++KL+ ++ + +++
Sbjct: 551 EKKLKMIMMSNKQKKLYKKMKYSNAKKE 578
Score = 16.5 bits (31), Expect = 3.6
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 159 KNNMVKTCEMLKDHFHYYVYKTNRIKKAFISVKGYYL----QAEILKKK 203
KN K E ++ + +N+ KK + +K QAE LKKK
Sbjct: 539 KNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKK 587
Lambda K H
0.317 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1143
Number of extensions: 77
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 643
Length of database: 605
Length adjustment: 37
Effective length of query: 606
Effective length of database: 568
Effective search space: 344208
Effective search space used: 344208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.7 bits)
S2: 28 (15.4 bits)