Query= PF11_0116 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) hypothetical protein (579 letters)
>YBL024W NCL1 SGDID:S000000120, Chr II from 172537-174591, Verified
           ORF, "S-adenosyl-L-methionine-dependent tRNA:
           m5C-methyltransferase, methylates cytosine to m5C at
           several positions in tRNAs and intron-containing
           pre-tRNAs; similar to Nop2p and human proliferation
           associated nucleolar protein p120"
          Length = 684

 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 17/150 (11%)

Query: 359 NGFLVINEYNKVRYERLKKVLDKYIPSDLINRSSNIHVTNYNGL---------NINSFLR 409
           +GF+V N+ +  R   L   L +         S+N+ V N++           N N+   
Sbjct: 195 SGFVVANDADARRSHMLVHQLKRL-------NSANLMVVNHDAQFFPRIRLHGNSNNKND 247

Query: 410 FPKFHKILLDVPCSTDEHLIKQGTKELNKWSIHVIKNNSDIQLQLLINAFTLLHTGGVII 469
             KF +IL DVPCS D  + ++       W+         +QL +L     LL   G ++
Sbjct: 248 VLKFDRILCDVPCSGDGTM-RKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLV 306

Query: 470 YSTCALSYLENDYVIEKFLKKYKNNIQIID 499
           YSTC+L+ +EN+ V+ + L+K+ + I++++
Sbjct: 307 YSTCSLNPIENEAVVAEALRKWGDKIRLVN 336

 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 197 IENVEKIIYYLNPCSILCAYFLDIKQNEHVLDMCASPGGKSLYIVNKL 244
           +EN    I      S++    L++K +  VLDMCA+PG K+  ++  L
Sbjct: 140 VENAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEAL 187

 Score = 17.7 bits (34), Expect = 1.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 186 NINDIIKYD 194
           N ND++K+D
Sbjct: 244 NKNDVLKFD 252

 Score = 16.5 bits (31), Expect = 3.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 48  INITKILLYMMKNN 61
           +NI    L+++KNN
Sbjct: 289 LNILNRGLHLLKNN 302

 Score = 15.8 bits (29), Expect = 6.2
 Identities = 4/12 (33%), Positives = 10/12 (83%)

Query: 53  ILLYMMKNNKVI 64
           I+ + MK+N+++
Sbjct: 548 IMKHHMKSNRIV 559
Lambda     K      H
   0.322    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 773
Number of extensions: 42
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 579
Length of database: 684
Length adjustment: 38
Effective length of query: 541
Effective length of database: 646
Effective search space:   349486
Effective search space used:   349486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)