Query= PF11_0117 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) replication factor C subunit 5, putative (349 letters)
>YBR087W RFC5 SGDID:S000000291, Chr II from 423759-424823, Verified
           ORF, "Subunit of heteropentameric Replication factor C
           (RF-C), which is a DNA binding protein and ATPase that
           acts as a clamp loader of the proliferating cell nuclear
           antigen (PCNA) processivity factor for DNA polymerases
           delta and epsilon"
          Length = 354

 Score =  155 bits (391), Expect = 2e-42
 Identities = 95/302 (31%), Positives = 162/302 (53%), Gaps = 15/302 (4%)

Query: 1   MWLEKYSPQSIDELTIHKDITERLRKLS-RHKDLPHIIFYGAPGGGKSTRINCLIKEIFK 59
           +W++KY P+S++ L+ ++++T  L+ LS + +DLPH++ YG  G GK TR   L++ IF 
Sbjct: 3   LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 60  DE----KIIRRPECITNAENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKS 115
                 KI  R + +T +  K+ +NVV S YHLE+   ++GN D+I++Q ++KE+   + 
Sbjct: 63  PGVYRLKIDVR-QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121

Query: 116 SASFFSKTPM---YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPL 172
                SK  +   Y+  +  +A  L++ AQA LRRT+E Y +N R+I+  + +S II P+
Sbjct: 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 181

Query: 173 KSRCICIRVPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALEM 232
           KSRC+ IR P PS+ EI ++L ++   E +     T +  + +      NLR  ++ LE 
Sbjct: 182 KSRCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLES 239

Query: 233 SVYANSSKPHQSLSVAAS----YINELCDFVFINPTQIKMKECVTKIQSLITCQIPVNFI 288
               N      S  +        I++L   +    +   + EC   +  L+   IP N I
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299

Query: 289 FE 290
            +
Sbjct: 300 LK 301
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 13
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 354
Length adjustment: 29
Effective length of query: 320
Effective length of database: 325
Effective search space:   104000
Effective search space used:   104000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.6 bits)
S2: 23 (13.5 bits)