Query= PF11_0117 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) replication
factor C subunit 5, putative
(349 letters)
>YBR087W RFC5 SGDID:S000000291, Chr II from 423759-424823, Verified
ORF, "Subunit of heteropentameric Replication factor C
(RF-C), which is a DNA binding protein and ATPase that
acts as a clamp loader of the proliferating cell nuclear
antigen (PCNA) processivity factor for DNA polymerases
delta and epsilon"
Length = 354
Score = 155 bits (391), Expect = 2e-42
Identities = 95/302 (31%), Positives = 162/302 (53%), Gaps = 15/302 (4%)
Query: 1 MWLEKYSPQSIDELTIHKDITERLRKLS-RHKDLPHIIFYGAPGGGKSTRINCLIKEIFK 59
+W++KY P+S++ L+ ++++T L+ LS + +DLPH++ YG G GK TR L++ IF
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62
Query: 60 DE----KIIRRPECITNAENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKS 115
KI R + +T + K+ +NVV S YHLE+ ++GN D+I++Q ++KE+ +
Sbjct: 63 PGVYRLKIDVR-QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
Query: 116 SASFFSKTPM---YRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPL 172
SK + Y+ + +A L++ AQA LRRT+E Y +N R+I+ + +S II P+
Sbjct: 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 181
Query: 173 KSRCICIRVPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALEM 232
KSRC+ IR P PS+ EI ++L ++ E + T + + + NLR ++ LE
Sbjct: 182 KSRCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLES 239
Query: 233 SVYANSSKPHQSLSVAAS----YINELCDFVFINPTQIKMKECVTKIQSLITCQIPVNFI 288
N S + I++L + + + EC + L+ IP N I
Sbjct: 240 MALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANII 299
Query: 289 FE 290
+
Sbjct: 300 LK 301
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 13
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 354
Length adjustment: 29
Effective length of query: 320
Effective length of database: 325
Effective search space: 104000
Effective search space used: 104000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.6 bits)
S2: 23 (13.5 bits)