Query= PF11_0200 Pf Annotation|Plasmodium_falciparum_TIGR|(protein coding) U2 snRNP auxiliary factor, small subunit, putative (294 letters)
>FBgn0017457 type=protein;
           loc=2L:complement(293622..294372,294441..294484);
           ID=FBpp0077792; name=U2af38-PA;
           parent=FBgn0017457,FBtr0078133;
           dbxref=FlyBase:FBpp0077792,
           FlyBase_Annotation_IDs:CG3582-PA,GB_protein:AAF51512.1,
           GB_protein:AAF51512;
           MD5=df11e82fa4d57097b20d30b586445e75; release=r5.1;
           species=Dmel; length=264;
          Length = 264

 Score =  220 bits (561), Expect = 2e-62
 Identities = 101/190 (53%), Positives = 143/190 (75%), Gaps = 2/190 (1%)

Query: 1   MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMYDNPPIAVA 60
           MAE+LA I GTE+D+VNC F++KIGACRHGD+CSR H KP  +QT++++++Y NP  +  
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60

Query: 61  IAEGQMVEDEVLDKAA-DHFEEFYEEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYT 118
            A+G  +   V D+   +H++ F+E+VF E   KYGEIE+M VCDN+GDH++GNVYIK+ 
Sbjct: 61  SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 120

Query: 119 HEDYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVP 178
           +E  AEKA N+LN R++ G+P+  E +PVTDFREA CRQ+  G+C R G+CNFMH+K + 
Sbjct: 121 NEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180

Query: 179 RTVKRKLFRR 188
           R ++R L+ R
Sbjct: 181 RELRRYLYSR 190
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 10
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 264
Length adjustment: 25
Effective length of query: 269
Effective length of database: 239
Effective search space:    64291
Effective search space used:    64291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)