Query= PF11_0200 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) U2 snRNP
auxiliary factor, small subunit, putative
(294 letters)
>FBgn0017457 type=protein;
loc=2L:complement(293622..294372,294441..294484);
ID=FBpp0077792; name=U2af38-PA;
parent=FBgn0017457,FBtr0078133;
dbxref=FlyBase:FBpp0077792,
FlyBase_Annotation_IDs:CG3582-PA,GB_protein:AAF51512.1,
GB_protein:AAF51512;
MD5=df11e82fa4d57097b20d30b586445e75; release=r5.1;
species=Dmel; length=264;
Length = 264
Score = 220 bits (561), Expect = 2e-62
Identities = 101/190 (53%), Positives = 143/190 (75%), Gaps = 2/190 (1%)
Query: 1 MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMYDNPPIAVA 60
MAE+LA I GTE+D+VNC F++KIGACRHGD+CSR H KP +QT++++++Y NP +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60
Query: 61 IAEGQMVEDEVLDKAA-DHFEEFYEEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYT 118
A+G + V D+ +H++ F+E+VF E KYGEIE+M VCDN+GDH++GNVYIK+
Sbjct: 61 SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 120
Query: 119 HEDYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVP 178
+E AEKA N+LN R++ G+P+ E +PVTDFREA CRQ+ G+C R G+CNFMH+K +
Sbjct: 121 NEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180
Query: 179 RTVKRKLFRR 188
R ++R L+ R
Sbjct: 181 RELRRYLYSR 190
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 253
Number of extensions: 10
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 264
Length adjustment: 25
Effective length of query: 269
Effective length of database: 239
Effective search space: 64291
Effective search space used: 64291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.6 bits)
S2: 21 (12.7 bits)