>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
           ORF, "Poly(A) binding protein, part of the 3'-end
           RNA-processing complex, mediates interactions between
           the 5' cap structure and the 3' mRNA poly(A) tail,
           involved in control of poly(A) tail length, interacts
           with translation factor eIF-4G"
          Length = 577

 Score = 34.3 bits (77), Expect = 7e-06
 Identities = 20/79 (25%), Positives = 36/79 (45%)

Query: 84  EEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVNELNGRFYAGKPLQIE 143
           E++ +E   YG I    V         G  ++ ++  + A KA+ E N +  AGKPL + 
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395

Query: 144 YTPVTDFREARCRQFVEGQ 162
                D R ++  Q ++ +
Sbjct: 396 IAQRKDVRRSQLAQQIQAR 414

 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 43  AQTLVIRHMYDNPPIAVAIAEGQMVEDEVLDKAADHFEEFYEE--VFDELMKYGEIEDMV 100
           A+ L   ++ D+   A   +E Q VE+          E    E  ++D     G +  + 
Sbjct: 9   AEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68

Query: 101 VC-DNIGDHIIGNVYIKYTHEDYAEKAVNELN 131
           VC D I    +G  Y+ +   +   KA+ +LN
Sbjct: 69  VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLN 100

 Score = 26.9 bits (58), Expect = 0.001
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 86  VFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVNELNGRFYAGKPLQIEYT 145
           ++D    +G+I    +  +      G  ++ +  E  A++A++ LNG    G+ +   Y 
Sbjct: 142 LYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI---YV 198

Query: 146 PVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRTVKRKLFRRMYKKY 193
                R+ R  Q  E    +  Y N +++K++      + F+ ++ K+
Sbjct: 199 APHLSRKERDSQLEE---TKAHYTN-LYVKNINSETTDEQFQELFAKF 242

 Score = 25.8 bits (55), Expect = 0.002
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 69  DEVLDKAADHFEEFY---------EEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYT 118
           D  L++   H+   Y         +E F EL  K+G I    +  +    + G  ++ Y 
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267

Query: 119 HEDYAEKAVNELNGRFYAGKPLQI 142
             + A KAV  LN     G+ L +
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYV 291

 Score = 21.6 bits (44), Expect = 0.047
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 111 GNVYIKYTHEDYAEKAV 127
           GN++IK  H D   KA+
Sbjct: 126 GNIFIKNLHPDIDNKAL 142

 Score = 15.8 bits (29), Expect = 2.6
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 255 HARRENSAERREKIERWNKEREMKNMNKEDNKSNADE 291
           H  R+    + E+ +       +KN+N E       E
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237

 Score = 14.2 bits (25), Expect = 7.4
 Identities = 4/7 (57%), Positives = 6/7 (85%)

Query: 79  FEEFYEE 85
           FE+ Y+E
Sbjct: 552 FEQHYKE 558

Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 335
Number of extensions: 20
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 294
Length of database: 577
Length adjustment: 31
Effective length of query: 263
Effective length of database: 546
Effective search space:   143598
Effective search space used:   143598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)