Query= PF11_0200 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) U2 snRNP
auxiliary factor, small subunit, putative
(294 letters)
>YER165W PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified
ORF, "Poly(A) binding protein, part of the 3'-end
RNA-processing complex, mediates interactions between
the 5' cap structure and the 3' mRNA poly(A) tail,
involved in control of poly(A) tail length, interacts
with translation factor eIF-4G"
Length = 577
Score = 34.3 bits (77), Expect = 7e-06
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 84 EEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVNELNGRFYAGKPLQIE 143
E++ +E YG I V G ++ ++ + A KA+ E N + AGKPL +
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 144 YTPVTDFREARCRQFVEGQ 162
D R ++ Q ++ +
Sbjct: 396 IAQRKDVRRSQLAQQIQAR 414
Score = 29.3 bits (64), Expect = 2e-04
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 43 AQTLVIRHMYDNPPIAVAIAEGQMVEDEVLDKAADHFEEFYEE--VFDELMKYGEIEDMV 100
A+ L ++ D+ A +E Q VE+ E E ++D G + +
Sbjct: 9 AEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIR 68
Query: 101 VC-DNIGDHIIGNVYIKYTHEDYAEKAVNELN 131
VC D I +G Y+ + + KA+ +LN
Sbjct: 69 VCRDAITKTSLGYAYVNFNDHEAGRKAIEQLN 100
Score = 26.9 bits (58), Expect = 0.001
Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 86 VFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYTHEDYAEKAVNELNGRFYAGKPLQIEYT 145
++D +G+I + + G ++ + E A++A++ LNG G+ + Y
Sbjct: 142 LYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI---YV 198
Query: 146 PVTDFREARCRQFVEGQCRRGGYCNFMHIKHVPRTVKRKLFRRMYKKY 193
R+ R Q E + Y N +++K++ + F+ ++ K+
Sbjct: 199 APHLSRKERDSQLEE---TKAHYTN-LYVKNINSETTDEQFQELFAKF 242
Score = 25.8 bits (55), Expect = 0.002
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 69 DEVLDKAADHFEEFY---------EEVFDELM-KYGEIEDMVVCDNIGDHIIGNVYIKYT 118
D L++ H+ Y +E F EL K+G I + + + G ++ Y
Sbjct: 208 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 119 HEDYAEKAVNELNGRFYAGKPLQI 142
+ A KAV LN G+ L +
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYV 291
Score = 21.6 bits (44), Expect = 0.047
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 111 GNVYIKYTHEDYAEKAV 127
GN++IK H D KA+
Sbjct: 126 GNIFIKNLHPDIDNKAL 142
Score = 15.8 bits (29), Expect = 2.6
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 255 HARRENSAERREKIERWNKEREMKNMNKEDNKSNADE 291
H R+ + E+ + +KN+N E E
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237
Score = 14.2 bits (25), Expect = 7.4
Identities = 4/7 (57%), Positives = 6/7 (85%)
Query: 79 FEEFYEE 85
FE+ Y+E
Sbjct: 552 FEQHYKE 558
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 335
Number of extensions: 20
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 294
Length of database: 577
Length adjustment: 31
Effective length of query: 263
Effective length of database: 546
Effective search space: 143598
Effective search space used: 143598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (14.0 bits)
S2: 24 (13.9 bits)