>YMR089C YTA12 SGDID:S000004695, Chr XIII from 448085-445608,
           reverse complement, Verified ORF, "Component, with
           Afg3p, of the mitochondrial inner membrane m-AAA
           protease that mediates degradation of misfolded or
           unassembled proteins and is also required for correct
           assembly of mitochondrial enzyme complexes"
          Length = 825

 Score =  525 bits (1352), Expect = e-153
 Identities = 299/638 (46%), Positives = 418/638 (65%), Gaps = 25/638 (3%)

Query: 327 NEITQNDFFYKYLSKGYVEKIKLINKDYVKAYLNSHGIKK---YHMKYVSFRVGNSDSFE 383
           +EIT  DF  K L+KGYV K+ ++NK  VK  LN +G  +   Y   +  F +G+ DSFE
Sbjct: 204 SEITWQDFREKLLAKGYVAKLIVVNKSMVKVMLNDNGKNQADNYGRNFYYFTIGSIDSFE 263

Query: 384 KKVEAVQREMNIKRDELIEVQYVNEANILNEVKGYIPSXXXXXXXXXXXQKITLKNVTNS 443
            K++  Q E++I +D  I V YV E N    +   +P+             +T ++   +
Sbjct: 264 HKLQKAQDELDIDKDFRIPVLYVQEGNWAKAMFQILPTVLMIAGIIW----LTRRSAQAA 319

Query: 444 GMDK--LFKFSKISPINKNSLKTDVK--FSSVAGMKQAKEEIMEFVDFLKNPTKYEILGA 499
           G  +  +F  S+ S   K + +TDVK  F  VAG  +AKEEIMEFV FLK P++YE +GA
Sbjct: 320 GGSRGGIFGLSR-SKAKKFNTETDVKIKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGA 378

Query: 500 KIPKGALLCGAPGTGKTLLAKAVAGEANVPFFNISGSDFIEVFVGIGPSRVRELFAQARK 559
           KIP+GA+L G PGTGKTLLAKA AGEA VPF+ +SGS+F+E+FVG+G +RVR+LF  AR+
Sbjct: 379 KIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARE 438

Query: 560 HAPSIIFIDEIDAVXXXXXXXXXXXXXNDERENTLNQMLVEMDGFHTSNDKVVVLAGTNR 619
           +APSI+FIDEIDA+             NDERENTLNQMLVEMDGF T  D VVVLAGTNR
Sbjct: 439 NAPSIVFIDEIDAIGKARQKGNFSGA-NDERENTLNQMLVEMDGF-TPADHVVVLAGTNR 496

Query: 620 VDILDPAITRPGRFDRIVNISKPDINERSEIFQVHLKNLKLH-ESLDIKNISYILASLTP 678
            DILD A+ RPGRFDR +NI KP++  R  IF VHL +LKL  E  D+KN    LA+LTP
Sbjct: 497 PDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNR---LAALTP 553

Query: 679 GFVGADIANVVNEGAIQCARRSNLLGVQIKDFELAIERVIGGLPKSSSLISPLEKKIISY 738
           GF GADIANV NE A+  A RS+   V++  FE AIERVIGG+ + S L+SP EKK+++Y
Sbjct: 554 GFSGADIANVCNEAAL-IAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAY 612

Query: 739 HETGHALIGWFLEFADPVLKVSIIPRNNGALGYSQHLSEEIMLFSRDAILDKIAVILGGR 798
           HE GHA+ GW+L++ADP+LKVSIIPR  GALGY+Q+L  +I L +   + D++ + LGGR
Sbjct: 613 HEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQLKDRMTMSLGGR 672

Query: 799 AAEELFIGKITTGAIDDLNKVTQLAYSYVSQYGMNQEIGLVSFQPNSNSEYNLYRPHSEC 858
            +EEL    +T+GA DD  KVT +A + V++ GM+ +IG V++Q   +S+  L +P S+ 
Sbjct: 673 VSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDSD--LTKPFSDE 730

Query: 859 LAHLIDNEVRSLIETQYKRVKSILMKNEKHVHNLANLLYEKETISYHDIVKCVGERPYPV 918
              +ID+EV  +++  + R   +L +  + V  +A +L +KE ++  D++  +G+RP+P 
Sbjct: 731 TGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGKRPFPE 790

Query: 919 KS-AYEKFVKANPYKAISSEPLLEDKKESDNMKGDTSN 955
           ++ A++K++     + I  E   E+K E  N    ++N
Sbjct: 791 RNDAFDKYLNDYETEKIRKE---EEKNEKRNEPKPSTN 825

 Score = 19.2 bits (38), Expect = 1.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 282 ENKSPNSNNFKPEEEKPRK 300
           ENKS N N    E+ K  K
Sbjct: 44  ENKSGNKNEDNNEDAKLNK 62

Lambda     K      H
   0.316    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1814
Number of extensions: 92
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 1052
Length of database: 825
Length adjustment: 43
Effective length of query: 1009
Effective length of database: 782
Effective search space:   789038
Effective search space used:   789038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.0 bits)
S2: 31 (16.5 bits)