Query= PF11_0225 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) PfGCN20
(815 letters)
>YFR009W GCN20 SGDID:S000001905, Chr VI from 162482-164740, Verified
ORF, "Positive regulator of the Gcn2p kinase activity,
forms a complex with Gcn1p; proposed to stimulate Gcn2p
activation by an uncharged tRNA"
Length = 752
Score = 321 bits (822), Expect = 1e-91
Identities = 204/618 (33%), Positives = 321/618 (51%), Gaps = 83/618 (13%)
Query: 172 VRVHNLLHCSDVGKNKTKIDKLYDIRIDNFNISIGQ-RSLLSDTTLKINVMNKYGLIGKN 230
++++ L S GK+K DI ID F++ +G + +LS+ L ++ ++YGL+G+N
Sbjct: 182 LQINPLEFGSSAGKSK-------DIHIDTFDLYVGDGQRILSNAQLTLSFGHRYGLVGQN 234
Query: 231 GIGKSTLLAKLARYEIEEIKKDISIACIEQELCLENVTVLESVLMVDKLRHDXXXXXXXX 290
GIGKSTLL L+R E+ + K +SI +EQEL ++ L+SVL D R
Sbjct: 235 GIGKSTLLRALSRRELN-VPKHVSILHVEQELRGDDTKALQSVLDADVWRKQLLSEEAKI 293
Query: 291 XARKIKLDPNEEILSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIETVESIEQKILDIY 350
R ++D + E ++ ++ I
Sbjct: 294 NERLKEMDVLRQEFEEDSLEVKKLDNER---------------------EDLDNHLIQIS 332
Query: 351 EKLNSISYLEAEKEASKILCGLGFDSNLQKKKVNSLSGGMKMRLCLSRILFSNNDIILLD 410
+KL + +AE A+ IL GLGF + Q++ NS SGG +MRL L+R LF D++LLD
Sbjct: 333 DKLVDMESDKAEARAASILYGLGFSTEAQQQPTNSFSGGWRMRLSLARALFCQPDLLLLD 392
Query: 411 EPTNHLDIYTIQFLIDYIKKLNKTCIIVSHDRDFLNEVCTDIIHFHNHQLTYYSG-NYDQ 469
EP+N LD+ +I +L +Y+K T + VSHDR FLNEV TDII+ HN +L YY G ++D
Sbjct: 393 EPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLNEVATDIIYQHNERLDYYRGQDFDT 452
Query: 470 FEKTRIEHLLQQQREHDSLELKKKHVQKFIDRFRYNSKRAALVQSRIKLLNKLPVVNLEK 529
F T+ E QRE+D+ + +KH+Q+FID++RYN+ ++ QSRIK L KLPV+ +
Sbjct: 453 FYTTKEERRKNAQREYDNQMVYRKHLQEFIDKYRYNAAKSQEAQSRIKKLEKLPVLEPPE 512
Query: 530 EDTPFSFSFLEPFYMSNVLIKLKNVSFRNKMFTNLRVRKNKNILIGDHXXXXXXXXXXXX 589
+D F F E +S +I+L++VSF
Sbjct: 513 QDKTIDFKFPECDKLSPPIIQLQDVSF--------------------------------- 539
Query: 590 XXXXXXGQPVSKTYEDKYKFKHEYLFKNASFEVDMDSRIAICGVNGSGXXXXXXXXXXXX 649
Y++ + L K+ + +V MDSRIA+ G NG G
Sbjct: 540 ------------GYDE-----NNLLLKDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQL 582
Query: 650 XVYEGELHVSNKANIGYYSQYHVDCLNPIYNSIQQLQYTYSNKNIKEEEAIKYFNKFNIP 709
+G + + + IGY++Q+HVD ++ +++ + ++ K +EE ++ F I
Sbjct: 583 RPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWMSKSFPGKT--DEEYRRHLGSFGIT 640
Query: 710 TNILYEPIYVLSGGQKSKLALAILAYKNPNVLILDEPSNHLDIESVQALIVALNMYKGGL 769
+ + + +LSGGQKS++A A L NP++L+LDEPSNHLD + AL+ AL + GG+
Sbjct: 641 GTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLDTTGLDALVEALKNFNGGV 700
Query: 770 IIISHDTYLIKHVADEIY 787
+++SHD +I V EI+
Sbjct: 701 LMVSHDISVIDSVCKEIW 718
Score = 66.2 bits (160), Expect = 6e-15
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 360 EAEKEASKILCGLGFDSNLQKKKVNSLSGGMKMRLCLSRILFSNNDIILLDEPTNHLDIY 419
+ ++E + L G L +K+ LSGG K R+ + + +N I++LDEP+NHLD
Sbjct: 625 KTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLDTT 684
Query: 420 TIQFLIDYIKKLNKTCIIVSHDRDFLNEVCTDIIHFHNHQLTYYSGNYDQFEKTRIEHLL 479
+ L++ +K N ++VSHD ++ VC +I G +FE T ++
Sbjct: 685 GLDALVEALKNFNGGVLMVSHDISVIDSVCKEI-------WVSEQGTVKRFEGTIYDYRD 737
Query: 480 QQQREHDSLELKKKH 494
+ D+ + KKH
Sbjct: 738 YILQSADAAGVVKKH 752
Score = 57.8 bits (138), Expect = 2e-12
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 696 EEEAIKYFNKFNIPTNILYEPIYVLSGGQKSKLALAILAYKNPNVLILDEPSNHLDIESV 755
E A T +P SGG + +L+LA + P++L+LDEPSN LD+ S+
Sbjct: 344 EARAASILYGLGFSTEAQQQPTNSFSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSI 403
Query: 756 QALIVALNMYKGGLIIISHDTYLIKHVADEIYHINN 791
L L Y ++ +SHD + VA +I + +N
Sbjct: 404 AYLAEYLKTYPNTVLTVSHDRAFLNEVATDIIYQHN 439
Score = 18.5 bits (36), Expect = 1.5
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 26 ERIIDEKYEIEKNGVDYFYDLVCSYADDKIKRSKIANIFNKH 67
+ + E + E+ V F + Y D ++ + A + KH
Sbjct: 711 DSVCKEIWVSEQGTVKRFEGTIYDYRDYILQSADAAGVVKKH 752
Score = 16.2 bits (30), Expect = 7.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 780 KHVADEIYHINNITKELVKIDYEFDK 805
K + E IN KE+ + EF++
Sbjct: 284 KQLLSEEAKINERLKEMDVLRQEFEE 309
Lambda K H
0.318 0.137 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1289
Number of extensions: 57
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 815
Length of database: 752
Length adjustment: 41
Effective length of query: 774
Effective length of database: 711
Effective search space: 550314
Effective search space used: 550314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.2 bits)
S2: 29 (15.8 bits)