>YFR001W LOC1 SGDID:S000001897, Chr VI from 149105-149719, Verified
           ORF, "Nuclear protein involved in asymmetric
           localization of ASH1 mRNA; binds double-stranded RNA in
           vitro; constituent of 66S pre-ribosomal particles"
          Length = 204

 Score = 37.0 bits (84), Expect = 2e-07
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 113 MNLILNMIDESIDDLPDSIMNEEEKCEEIKKLQRKKDEAKEELK 156
           +N ++  I +  DD+ +S + +  + EEI++L+RK+ E KE LK
Sbjct: 108 LNRLITTIGDKYDDIAESKLEKARRLEEIRELKRKEIERKEALK 151

 Score = 18.5 bits (36), Expect = 0.081
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 9/31 (29%)

Query: 135 EEKCEEIKK---------LQRKKDEAKEELK 156
           EEK +EIKK          + K+D  K E K
Sbjct: 156 EEKKDEIKKKSSVARTIRRKNKRDMLKSEAK 186

 Score = 13.9 bits (24), Expect = 2.0
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 142 KKLQRKKDEAK 152
           K  QRK  + K
Sbjct: 39  KSAQRKPSKTK 49

Lambda     K      H
   0.313    0.134    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 7
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 181
Length of database: 204
Length adjustment: 20
Effective length of query: 161
Effective length of database: 184
Effective search space:    29624
Effective search space used:    29624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.0 bits)
S2: 18 (11.5 bits)