>YPR010C RPA135 SGDID:S000006214, Chr XVI from 581193-577582, reverse
            complement, Verified ORF, "RNA polymerase I subunit A135"
          Length = 1203

 Score =  261 bits (666), Expect = 4e-73
 Identities = 148/353 (41%), Positives = 214/353 (60%), Gaps = 35/353 (9%)

Query: 901  GSDNNMSTTTYIDSDENINIDMYEQI-------PQKFE-----YMELKETSFLSFLASLT 948
            G    +    Y+  D+   +  +EQ+       PQ+ +     ++E   T+ LS LA+LT
Sbjct: 645  GHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLT 704

Query: 949  PFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDN 1008
            PFSD NQSPRN+YQCQM KQTMG   +   +   NK+YR+ T Q P+V    Y+ YG+DN
Sbjct: 705  PFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDN 764

Query: 1009 FPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTEFIDL---QKVGE--SSN 1063
            FP+G NAVVA+++YTGYDM+DA+IINK++ +RG     +YKTE +DL   +  G+  + +
Sbjct: 765  FPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQH 824

Query: 1064 FVFGNNIRYLXXXXXXXXXLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTTY 1123
            F FGN+               +  K   L++DGLP +   + EG P+ +Y +     T  
Sbjct: 825  FGFGND----------EWPKEWLEK---LDEDGLPYIGTYVEEGDPICAYFDDTLNKTKI 871

Query: 1124 ESFRNHGEYFVDFVSIGKNNSN-----QVAVVKLRSTRQPQVGDKFASRHGQKGVVSRLF 1178
            +++ +    +++ V++  + SN     Q   +K R  R PQ+GDKF+SRHGQKGV SR +
Sbjct: 872  KTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKW 931

Query: 1179 PQEDMPFAESGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGKRIDATPF 1231
            P  DMPF+E+GI PDII NPH  PSRMTIGM +ES+ GKA +L+G   D+TP+
Sbjct: 932  PTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPW 984

 Score =  151 bits (382), Expect = 4e-40
 Identities = 84/212 (39%), Positives = 120/212 (56%), Gaps = 28/212 (13%)

Query: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
            D   DYF + L   GY+Y+G E +YSG  G  L+A I++GV+YYQRLRHM  DK QVR T
Sbjct: 990  DTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRST 1049

Query: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
            GPV +LT QP+KG+++HGGIRVGEMERD +I HG SF++ +R L SSD  +  VC +CG 
Sbjct: 1050 GPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGS 1109

Query: 1445 ILSP------------------IMQFNTTGKIMKGRSIGGKSKMAVCKSCD--------- 1477
            IL+                    M+F    K++     G K  +   +  +         
Sbjct: 1110 ILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVG 1169

Query: 1478 -VSCKIIFIPYVIRYLLNELICLNVTIRLNMK 1508
                  + IP+V++YL +EL  + + +R N++
Sbjct: 1170 GNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201

 Score =  120 bits (300), Expect = 1e-30
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%)

Query: 502 KNESKKKLKSIFINEKEKLFRSVDNYFKELYNDNYMFLENCKSFSNTSSAILFFFKTGNI 561
           K +  + L++I    +  + R +   FK+     YM     +   N  S + +F  TGN+
Sbjct: 414 KEKIDEYLQNIIAQVRMDINRGMAINFKD---KRYMSRVLMRVNENIGSKMQYFLSTGNL 470

Query: 562 SSEN-LHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDVKVLTPRKLLGESWGFICP 620
            S++ L  QQ SG+ + A++IN  R I++FR +HRG+FF  +K  T RKLL ESWGF+CP
Sbjct: 471 VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCP 530

Query: 621 VHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIGINVNLDDTSGIHTIYDDE 680
           VHTPDG+PCGLLNH A  C I   S+ ++    I   L  +G+          HT     
Sbjct: 531 VHTPDGSPCGLLNHFAHKCRI---STQQSDVSRIPSILYSLGV------APASHTFAAGP 581

Query: 681 NIPII-VDSIPITYIGEKDFNRTVYKLKYAK-NNNLFNLKSYFEINAYLNEPLIMNSIII 738
           ++  + +D   I ++  +        L+Y K       L    EI  Y+          +
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEI-GYVPPSTRGQYPGL 640

Query: 739 NTFPG--RLIRPLLNLKTKDIEFISPSYQPYISVAINNEDV 777
             F G  R++RP+  L     + + P  Q Y+++A+  +++
Sbjct: 641 YLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEI 681

 Score = 51.6 bits (122), Expect = 5e-10
 Identities = 76/385 (19%), Positives = 146/385 (37%), Gaps = 37/385 (9%)

Query: 72  VQSHIDDFNSF--------INVYIKNIAENIPIMEFSPQQXXXXXXXXXXXXXESVKFFV 123
           VQ HI  FN+         +N+ +K+I E + I +  P               + +   V
Sbjct: 42  VQPHIGSFNALTEGPDGGLLNLGVKDIGEKV-IFDGKPLNSEDEISNSGYLGNK-LSVSV 99

Query: 124 SDIQIKNPMIKN--DKGEYRADYPYLCKLSARTYEGELLIKIN---RQYKDEIASTTICA 178
             + I  PM  +       R  YP   +    +Y G+LL+K+       ++ +     C 
Sbjct: 100 EQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCG 159

Query: 179 GHIPIMIMXXXXXXXXXXXXXXAQKGEDQSLLGGFFVVSGRLKVIRYVI-----HPK--- 230
           G +P+M+                Q  E+   +GG+F+V+G  K+IR +I     HP    
Sbjct: 160 G-LPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAII 218

Query: 231 ----YNTLLLNADNKIHINCLLNDNTVVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLM 286
                N     +   I I  +  D T   N L    +    + F ++     +P  ++L 
Sbjct: 219 RPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILK 278

Query: 287 ILSPIKKKSYIFNKIKLGVENENAIKYIELFINSIFLKDTFNEKELFEKYNLSYLGRIAY 346
            L     +      I   V++      +EL +        F ++    +     L  +  
Sbjct: 279 ALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRG------FKKRYPHLQNRTQVLQYLGD 332

Query: 347 LRRGIFKYNLNCYE-KKAKDILKYCILPHI--KNNSEKFETMCFMFKKLIYSNFKLITPI 403
             R +F+ + +  + +  +++L   +L H+    + +KF  + FM +KL        +P 
Sbjct: 333 KFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPD 392

Query: 404 NKDSLENHAVTTCSNLLANLLKDQV 428
           N D+ ++  V     L   +LK+++
Sbjct: 393 NPDATQHQEVLLGGFLYGMILKEKI 417

 Score = 23.5 bits (49), Expect = 0.14
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 478 LNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY 532
           + Q+S++K   +   SS  +   Y +ES+++L S       KL  SV+N  + L+
Sbjct: 99  VEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLF 153

 Score = 21.9 bits (45), Expect = 0.42
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 201 AQKGEDQSLLGGFFVVSGRLKVIRYVIH 228
           +Q G D   + G+ VV+ ++   R++ H
Sbjct: 472 SQSGLDLQQVSGYTVVAEKINFYRFISH 499

 Score = 17.7 bits (34), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 447  FETKYNTFKLSVKQIYLRYKM 467
            F  KY   +LS   I LRY +
Sbjct: 1180 FVLKYLDSELSAMGIRLRYNV 1200

Lambda     K      H
   0.321    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3940
Number of extensions: 190
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 1517
Length of database: 1203
Length adjustment: 49
Effective length of query: 1468
Effective length of database: 1154
Effective search space:  1694072
Effective search space used:  1694072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.6 bits)
S2: 34 (17.7 bits)