Query= PF11_0358 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) DNA-directed
RNA polymerase, beta subunit, putative
(1517 letters)
>YPR010C RPA135 SGDID:S000006214, Chr XVI from 581193-577582, reverse
complement, Verified ORF, "RNA polymerase I subunit A135"
Length = 1203
Score = 261 bits (666), Expect = 4e-73
Identities = 148/353 (41%), Positives = 214/353 (60%), Gaps = 35/353 (9%)
Query: 901 GSDNNMSTTTYIDSDENINIDMYEQI-------PQKFE-----YMELKETSFLSFLASLT 948
G + Y+ D+ + +EQ+ PQ+ + ++E T+ LS LA+LT
Sbjct: 645 GHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLT 704
Query: 949 PFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDN 1008
PFSD NQSPRN+YQCQM KQTMG + + NK+YR+ T Q P+V Y+ YG+DN
Sbjct: 705 PFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDN 764
Query: 1009 FPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTEFIDL---QKVGE--SSN 1063
FP+G NAVVA+++YTGYDM+DA+IINK++ +RG +YKTE +DL + G+ + +
Sbjct: 765 FPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQH 824
Query: 1064 FVFGNNIRYLXXXXXXXXXLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTTY 1123
F FGN+ + K L++DGLP + + EG P+ +Y + T
Sbjct: 825 FGFGND----------EWPKEWLEK---LDEDGLPYIGTYVEEGDPICAYFDDTLNKTKI 871
Query: 1124 ESFRNHGEYFVDFVSIGKNNSN-----QVAVVKLRSTRQPQVGDKFASRHGQKGVVSRLF 1178
+++ + +++ V++ + SN Q +K R R PQ+GDKF+SRHGQKGV SR +
Sbjct: 872 KTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKW 931
Query: 1179 PQEDMPFAESGIVPDIIFNPHGIPSRMTIGMLIESICGKAASLYGKRIDATPF 1231
P DMPF+E+GI PDII NPH PSRMTIGM +ES+ GKA +L+G D+TP+
Sbjct: 932 PTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPW 984
Score = 151 bits (382), Expect = 4e-40
Identities = 84/212 (39%), Positives = 120/212 (56%), Gaps = 28/212 (13%)
Query: 1325 DEKIDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRT 1384
D DYF + L GY+Y+G E +YSG G L+A I++GV+YYQRLRHM DK QVR T
Sbjct: 990 DTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRST 1049
Query: 1385 GPVCNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGL 1444
GPV +LT QP+KG+++HGGIRVGEMERD +I HG SF++ +R L SSD + VC +CG
Sbjct: 1050 GPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGS 1109
Query: 1445 ILSP------------------IMQFNTTGKIMKGRSIGGKSKMAVCKSCD--------- 1477
IL+ M+F K++ G K + + +
Sbjct: 1110 ILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVG 1169
Query: 1478 -VSCKIIFIPYVIRYLLNELICLNVTIRLNMK 1508
+ IP+V++YL +EL + + +R N++
Sbjct: 1170 GNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201
Score = 120 bits (300), Expect = 1e-30
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 18/281 (6%)
Query: 502 KNESKKKLKSIFINEKEKLFRSVDNYFKELYNDNYMFLENCKSFSNTSSAILFFFKTGNI 561
K + + L++I + + R + FK+ YM + N S + +F TGN+
Sbjct: 414 KEKIDEYLQNIIAQVRMDINRGMAINFKD---KRYMSRVLMRVNENIGSKMQYFLSTGNL 470
Query: 562 SSEN-LHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDVKVLTPRKLLGESWGFICP 620
S++ L QQ SG+ + A++IN R I++FR +HRG+FF +K T RKLL ESWGF+CP
Sbjct: 471 VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCP 530
Query: 621 VHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIGINVNLDDTSGIHTIYDDE 680
VHTPDG+PCGLLNH A C I S+ ++ I L +G+ HT
Sbjct: 531 VHTPDGSPCGLLNHFAHKCRI---STQQSDVSRIPSILYSLGV------APASHTFAAGP 581
Query: 681 NIPII-VDSIPITYIGEKDFNRTVYKLKYAK-NNNLFNLKSYFEINAYLNEPLIMNSIII 738
++ + +D I ++ + L+Y K L EI Y+ +
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEI-GYVPPSTRGQYPGL 640
Query: 739 NTFPG--RLIRPLLNLKTKDIEFISPSYQPYISVAINNEDV 777
F G R++RP+ L + + P Q Y+++A+ +++
Sbjct: 641 YLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEI 681
Score = 51.6 bits (122), Expect = 5e-10
Identities = 76/385 (19%), Positives = 146/385 (37%), Gaps = 37/385 (9%)
Query: 72 VQSHIDDFNSF--------INVYIKNIAENIPIMEFSPQQXXXXXXXXXXXXXESVKFFV 123
VQ HI FN+ +N+ +K+I E + I + P + + V
Sbjct: 42 VQPHIGSFNALTEGPDGGLLNLGVKDIGEKV-IFDGKPLNSEDEISNSGYLGNK-LSVSV 99
Query: 124 SDIQIKNPMIKN--DKGEYRADYPYLCKLSARTYEGELLIKIN---RQYKDEIASTTICA 178
+ I PM + R YP + +Y G+LL+K+ ++ + C
Sbjct: 100 EQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCG 159
Query: 179 GHIPIMIMXXXXXXXXXXXXXXAQKGEDQSLLGGFFVVSGRLKVIRYVI-----HPK--- 230
G +P+M+ Q E+ +GG+F+V+G K+IR +I HP
Sbjct: 160 G-LPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAII 218
Query: 231 ----YNTLLLNADNKIHINCLLNDNTVVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLM 286
N + I I + D T N L + + F ++ +P ++L
Sbjct: 219 RPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILK 278
Query: 287 ILSPIKKKSYIFNKIKLGVENENAIKYIELFINSIFLKDTFNEKELFEKYNLSYLGRIAY 346
L + I V++ +EL + F ++ + L +
Sbjct: 279 ALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRG------FKKRYPHLQNRTQVLQYLGD 332
Query: 347 LRRGIFKYNLNCYE-KKAKDILKYCILPHI--KNNSEKFETMCFMFKKLIYSNFKLITPI 403
R +F+ + + + + +++L +L H+ + +KF + FM +KL +P
Sbjct: 333 KFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPD 392
Query: 404 NKDSLENHAVTTCSNLLANLLKDQV 428
N D+ ++ V L +LK+++
Sbjct: 393 NPDATQHQEVLLGGFLYGMILKEKI 417
Score = 23.5 bits (49), Expect = 0.14
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 478 LNQISLSKSSEDINDSSYQDNNDYKNESKKKLKSIFINEKEKLFRSVDNYFKELY 532
+ Q+S++K + SS + Y +ES+++L S KL SV+N + L+
Sbjct: 99 VEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLF 153
Score = 21.9 bits (45), Expect = 0.42
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 201 AQKGEDQSLLGGFFVVSGRLKVIRYVIH 228
+Q G D + G+ VV+ ++ R++ H
Sbjct: 472 SQSGLDLQQVSGYTVVAEKINFYRFISH 499
Score = 17.7 bits (34), Expect = 7.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 447 FETKYNTFKLSVKQIYLRYKM 467
F KY +LS I LRY +
Sbjct: 1180 FVLKYLDSELSAMGIRLRYNV 1200
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3940
Number of extensions: 190
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 1517
Length of database: 1203
Length adjustment: 49
Effective length of query: 1468
Effective length of database: 1154
Effective search space: 1694072
Effective search space used: 1694072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.6 bits)
S2: 34 (17.7 bits)