>YPR110C RPC40 SGDID:S000006314, Chr XVI from 746833-745826, reverse
           complement, Verified ORF, "RNA polymerase subunit,
           common to RNA polymerase I and III"
          Length = 335

 Score =  171 bits (433), Expect = 2e-47
 Identities = 111/332 (33%), Positives = 173/332 (52%), Gaps = 21/332 (6%)

Query: 9   NFVQLGEEGPRNATTTNFYGSYYFSDKENYFDIRKFEENLEMNVXXXXXXXXXXXXXXMD 68
           N V +      N T+T+F G  +  D EN +++ KF+++ E+N+              +D
Sbjct: 3   NIVGIEYNRVTNTTSTDFPG--FSKDAENEWNVEKFKKDFEVNISSLDAREANFDLINID 60

Query: 69  VSIANALRRIMLSEVPTIAIEKVNMYQNTGIIADEILCHRLGLIPFKFDADLINYKE--- 125
            SIANA RRIM+SEVP++A E V  + NT +I DE+L HR+GL+P K D D++ + +   
Sbjct: 61  TSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNL 120

Query: 126 -DNEKYNHLNCFCFKLHVKFS----SKRTGND-----NYQSIYSKDLKWCPINEQQRIKF 175
            D+EK+   N     L+VK +    + +   D     N   +Y++DLK+ P   +Q   F
Sbjct: 121 PDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEP-QGRQSTTF 179

Query: 176 EKNPPKVVDENILITKISSGQEIELICFLQKGIGKTHAKWSPVCTAVYKMYPHFSFNTNE 235
              P    D +IL+ K+  GQEI L      GIG  HAK+SPV TA Y++ P    N  +
Sbjct: 180 ADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLP--QINILQ 237

Query: 236 QLSYEEKKDLVNICPQKVFDI-EDSQQIFVKNPLSCSTCRVCI--EKYPKKISFQKEKNH 292
            +  E  +      P  V  I E S + +VK+    +  R  +  E++  K+   + +NH
Sbjct: 238 PIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNH 297

Query: 293 FIFTIESTGCFSAADIFKKALFILRQKVINVK 324
           FIF +ES G  +  +IF K++ IL+ K   +K
Sbjct: 298 FIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329

Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 283
Number of extensions: 13
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 335
Length adjustment: 28
Effective length of query: 305
Effective length of database: 307
Effective search space:    93635
Effective search space used:    93635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.5 bits)
S2: 23 (13.5 bits)