>YMR260C TIF11 SGDID:S000004873, Chr XIII from 789838-789377,
           reverse complement, Verified ORF, "Translation
           initiation factor eIF1A, essential protein that forms a
           complex with Sui1p (eIF1) and the 40S ribosomal subunit
           and scans for the start codon; C-terminus associates
           with Fun12p (eIF5B); N terminus interacts with eIF2 and
           eIF3"
          Length = 153

 Score =  169 bits (429), Expect = 2e-47
 Identities = 85/141 (60%), Positives = 104/141 (73%), Gaps = 8/141 (5%)

Query: 18  DNEGEKRELLYKEEDQEYAQVLRMLGNGRLEAHCFDGVKRLCHIRGKMRKRVWINSGDII 77
           D++G KREL+YKEE QEYAQ+ +MLGNGR+EA CFDG KR+ HIRGK+RK+VW+  GDII
Sbjct: 18  DSDGPKRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDII 77

Query: 78  LVSLRDYQDSKADVIAKYTPDEARSLKAHGELPETAKINETDIFDDDGQNGVEF---LDD 134
           LVSLRD+QD + DV+ KY  DEAR+LK  GELPE AKINETD F  +    V F     D
Sbjct: 78  LVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKINETDNFGFESDEDVNFEFGNAD 137

Query: 135 ESDEEAQEEMNNARRLDIEDV 155
           E DEE ++E      LDI+D+
Sbjct: 138 EDDEEGEDE-----ELDIDDI 153

 Score = 13.5 bits (23), Expect = 1.8
 Identities = 4/8 (50%), Positives = 7/8 (87%)

Query: 158 KQENLYKK 165
           K+E +YK+
Sbjct: 23  KRELIYKE 30

Lambda     K      H
   0.315    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 160
Number of extensions: 7
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 153
Length adjustment: 17
Effective length of query: 154
Effective length of database: 136
Effective search space:    20944
Effective search space used:    20944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 17 (10.6 bits)
S2: 17 (11.2 bits)