Query= PF11_0477 Pf
Annotation|Plasmodium_falciparum_TIGR|(protein coding) CCAAT-box DNA
binding protein subunit B
(1301 letters)
>YBL021C HAP3 SGDID:S000000117, Chr II from 182097-181663, reverse
complement, Verified ORF, "Subunit of the heme-activated,
glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a
transcriptional activator and global regulator of
respiratory gene expression; contains sequences
contributing to both complex assembly and DNA binding"
Length = 144
Score = 112 bits (281), Expect = 2e-29
Identities = 54/102 (52%), Positives = 74/102 (72%)
Query: 1129 DSETLLPIANISRIMKRILPGSAKVAKESKDIIRECVTEFIQFLTSEASDRCTREKRKTI 1188
+ + LPI N++R+MK LP SAKV+K++K+ ++ECV+E I F+TSEASDRC +KRKTI
Sbjct: 37 EQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRKTI 96
Query: 1189 NGEDILYSMEKLGFNDYIEPLTEYLNKWKQLKELNNSNNYHE 1230
NGEDIL S+ LGF +Y E L YL K++Q + L N Y +
Sbjct: 97 NGEDILISLHALGFENYAEVLKIYLAKYRQQQALKNQLMYEQ 138
Lambda K H
0.309 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 340
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1301
Length of database: 144
Length adjustment: 31
Effective length of query: 1270
Effective length of database: 113
Effective search space: 143510
Effective search space used: 143510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.7 bits)
S2: 24 (13.9 bits)