Query= PF13_0014 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
protein S7 homologue, putative
(194 letters)
>YNL096C RPS7B SGDID:S000005040, Chr XIV from
444317-444174,443828-443400, reverse complement,
Verified ORF, "Protein component of the small (40S)
ribosomal subunit, nearly identical to Rps7Ap; interacts
with Kti11p; deletion causes hypersensitivity to
zymocin; has similarity to rat S7 and Xenopus S8
ribosomal proteins"
Length = 190
Score = 128 bits (322), Expect = 6e-35
Identities = 74/191 (38%), Positives = 123/191 (64%), Gaps = 7/191 (3%)
Query: 1 MDAVQKRVLKSNPSDLEKEIAQCLLDIELXXXXDIKTDAKEIKLLSCDLIEVEKLKKKTI 60
M +VQ ++L PS+LE ++A+ +D+E ++K D + +++ S I+V KK +
Sbjct: 1 MSSVQSKILSQAPSELELQVAKTFIDLE-SSSPELKADLRPLQIKSIREIDVTG-GKKAL 58
Query: 61 LIYIPYKIYTTYVRKIQRKLINELEKK-TKKYVVLVAKRTIL-KGKQKNKSFKIIPRSRT 118
++++P + Y K+Q KL ELEKK ++V+ +A+R IL K + ++ + PRSRT
Sbjct: 59 VLFVPVPALSAY-HKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRT 117
Query: 119 LTSVYDSILEDIVSPSEIIGKRISMKADGKRVFKIMLDSKERQRDNIEEKLISFAAVYKK 178
LT+V+D +LED+V P+EI+GKR+ G ++ K++LDSK+ Q+ I+ KL SF AVY K
Sbjct: 118 LTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQ--IDYKLESFQAVYNK 175
Query: 179 ITRRDAVFSLP 189
+T + VF +P
Sbjct: 176 LTGKQIVFEIP 186
Lambda K H
0.317 0.135 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 10
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 190
Length adjustment: 20
Effective length of query: 174
Effective length of database: 170
Effective search space: 29580
Effective search space used: 29580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.1 bits)
S2: 18 (11.5 bits)