>YOR259C RPT4 SGDID:S000005785, Chr XV from 813708-812395, reverse
           complement, Verified ORF, "One of six ATPases of the 19S
           regulatory particle of the 26S proteasome involved in
           the degradation of ubiquitinated substrates; required
           for spindle pole body duplication; localized mainly to
           the nucleus throughout the cell cycle"
          Length = 437

 Score =  504 bits (1297), Expect = e-147
 Identities = 242/391 (61%), Positives = 317/391 (81%), Gaps = 6/391 (1%)

Query: 3   NKESIKLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLKQL 62
           + +++  + +K++EHR  + ++K+ R +I++L K Y+KTE+++KALQS+GQ+IG+V+K+L
Sbjct: 53  HNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKEL 112

Query: 63  EDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLVFNMIS 122
            +EK+IVKASSGPRY+VG ++ +++SKL  G RV+LD+TTLT+M+ LP E DPLV+NM S
Sbjct: 113 SEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTS 172

Query: 123 DIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLYGPPGT 182
                     ++ ++ IGGL+EQIR++REV+ELP+ NP +++RVGIK PKGVLLYGPPGT
Sbjct: 173 F------EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGT 226

Query: 183 GKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEIDAI 242
           GKTLLA+A+A+ I  NF+    S IVDKYIGESARIIREMF YAKEH+PCIIFMDE+DAI
Sbjct: 227 GKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286

Query: 243 GGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLDRK 302
           GGRRFS+GTSADREIQRTLMELL  +DGF+ LG  KIIMATNRPD LDPAL+RPGRLDRK
Sbjct: 287 GGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRK 346

Query: 303 IEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIRAM 362
           +EIPLPNE  R+EI KIH  K+ K G+ D+E+  ++ DGFNGAD+RN  TEAG FAIR  
Sbjct: 347 VEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406

Query: 363 RDYVIEEDFYKAARKISEGKKLEGKIEYEKI 393
           RD++  +D  KA RK++E KKLEG IEY+K+
Sbjct: 407 RDHINPDDLMKAVRKVAEVKKLEGTIEYQKL 437

Lambda     K      H
   0.319    0.138    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 532
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 437
Length adjustment: 31
Effective length of query: 362
Effective length of database: 406
Effective search space:   146972
Effective search space used:   146972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 24 (13.9 bits)
S2: 24 (13.9 bits)