Query= PF13_0035 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical protein (1011 letters)
>YDR449C UTP6 SGDID:S000002857, Chr IV from 1358893-1357571, reverse
           complement, Verified ORF, "Nucleolar protein, component
           of the small subunit (SSU) processome containing the U3
           snoRNA that is involved in processing of pre-18S rRNA"
          Length = 440

 Score = 52.4 bits (124), Expect = 7e-11
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 135 KVEKKLQTLLGYSLSEHSLIKRIINIFDVCLRKYYNNISLWLQYFNFCFIK---KKYDEL 191
           + ++ LQ     SLS+ S+ +RI  I+     K+  ++  W  Y N+   +     Y ++
Sbjct: 70  RCKRILQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKI 129

Query: 192 ENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTRMLYLRAILFIPDSIYLNILYFHFE 251
            N     LK H  N  IW+    Y Y +  N    R ++   + F PD   L   Y  FE
Sbjct: 130 HNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFE 189

Query: 252 CDVFIKLLNNYK 263
            +   KL+N  K
Sbjct: 190 LNFITKLINRRK 201

 Score = 45.4 bits (106), Expect = 8e-09
 Identities = 44/228 (19%), Positives = 83/228 (36%), Gaps = 29/228 (12%)

Query: 1   MDKVCKIIENMVYEFNDLKRKELFSDKEIIAIANKRRHHEYRINSPTSVLLHFILYLEFE 60
           M K    +E  + E +DL  K LF+  E+  I  KR   E+R+NS  S +  +I Y+ +E
Sbjct: 1   MSKTRYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYE 60

Query: 61  MNLXXXXXXXXXXXXXXXXXXXLQNKNLIKNHYKEFSILKNKMEEEKRFDXXXXXXXXXX 120
            N+                   L + ++ +     +    NK  ++ +F           
Sbjct: 61  SNVNKLRAKRCKRILQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKF----------- 109

Query: 121 XXXXXXXXXXXXVLKVEKKLQTLLGYSLSEHSLIKRIINIFDVCLRKYYNNISLWLQYFN 180
                        L   K       Y        K+I NI++  L+ +  N+ +W+    
Sbjct: 110 ---------WAMYLNYMKARGNQTSY--------KKIHNIYNQLLKLHPTNVDIWISCAK 152

Query: 181 FCF-IKKKYDELENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTR 227
           + + +   +    N   N L+++     +W  Y+ +  N    +I  R
Sbjct: 153 YEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFELNFITKLINRR 200

 Score = 22.3 bits (46), Expect = 0.074
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 39/120 (32%)

Query: 158 INIFDVCLR---KYY--------------NNISLWLQYFNFCFIK-----KKYDEL---- 191
           + IFDVC++   K+Y               NI L  +  N+ F +     K +DE     
Sbjct: 271 LTIFDVCMKTLGKHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDEFLDLE 330

Query: 192 ENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTRMLYLRAILFIPDSIYLNILYFHFE 251
            + ++N +    KN++       Y  +++K++ +   LYL+ ++     I LNI Y   E
Sbjct: 331 RDYLINHVLQFWKNDM-------YDLSLRKDLPE---LYLKTVMI---DITLNIRYMPVE 377

 Score = 20.4 bits (41), Expect = 0.28
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 428 DKYGLDVIIFLIKKYMSTLSKDKSKLHIFVFLLLNTLLKIEKNSWIKMYTKQYDDFKQVV 487
           +K  +D +   +KKY + +SK  S     V  L N      +++++K    + DD +  +
Sbjct: 377 EKLDIDQLQLSVKKYFAYISKLDS---ASVKSLKNEYRSYLQDNYLKKMNAE-DDPRYKI 432

Query: 488 LDSINS 493
           LD I S
Sbjct: 433 LDLIIS 438

 Score = 17.7 bits (34), Expect = 1.8
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 709 KLNFITHVCLMEKNHSEISSNNYLFSYDKTNKNKDILSSILYFFLYNPKNLVQKVS---D 765
           +LNFIT +    K    I+            KN               K+ +Q  S    
Sbjct: 189 ELNFITKLINRRKVMGLINEREQELDMQNEQKNNQAPD--------EEKSHLQVPSTGDS 240

Query: 766 QKAKINEIKEQNIS 779
            K K+NE+ E +IS
Sbjct: 241 MKDKLNELPEADIS 254

 Score = 17.3 bits (33), Expect = 2.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 518 FFEDEEFTILKDQYYKTSMEKIENKNIYNI 547
           F +D +F  +   Y K    +   K I+NI
Sbjct: 103 FPQDLKFWAMYLNYMKARGNQTSYKKIHNI 132

 Score = 17.3 bits (33), Expect = 2.4
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 36/142 (25%)

Query: 433 DVIIFLIKKYMSTLSKDKSKLHIFVFLLLNTLLKIEKN--------SWIKMYTKQYDDFK 484
           D+ + +    M TL K     H   + + ++ + IE N        S    Y K +D+F 
Sbjct: 268 DIALTIFDVCMKTLGKHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDEFL 327

Query: 485 QVVLDSINSCKFEQPFLYYYFFIETCVNSCYFDFFEDEEFTILKDQYYKTSM-------- 536
            +  D               + I   +     D ++      L + Y KT M        
Sbjct: 328 DLERD---------------YLINHVLQFWKNDMYDLSLRKDLPELYLKTVMIDITLNIR 372

Query: 537 ----EKIENKNIY-NIEKYFKY 553
               EK++   +  +++KYF Y
Sbjct: 373 YMPVEKLDIDQLQLSVKKYFAY 394

 Score = 15.8 bits (29), Expect = 7.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 504 YFFIETCVNSCYFDFFEDEEFTILKDQYYK 533
           YF   + ++S      ++E  + L+D Y K
Sbjct: 391 YFAYISKLDSASVKSLKNEYRSYLQDNYLK 420

 Score = 15.4 bits (28), Expect = 9.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 418 NNIYSVIKEEDKYGLDVIIFLIKKYMSTLSKDKSKLHIF 456
           +NIY+ + +     +D+ I   K      +  KS  +IF
Sbjct: 130 HNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIF 168
Lambda     K      H
   0.322    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1057
Number of extensions: 65
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1011
Length of database: 440
Length adjustment: 38
Effective length of query: 973
Effective length of database: 402
Effective search space:   391146
Effective search space used:   391146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)