Query= PF13_0035 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1011 letters)
>YDR449C UTP6 SGDID:S000002857, Chr IV from 1358893-1357571, reverse
complement, Verified ORF, "Nucleolar protein, component
of the small subunit (SSU) processome containing the U3
snoRNA that is involved in processing of pre-18S rRNA"
Length = 440
Score = 52.4 bits (124), Expect = 7e-11
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 135 KVEKKLQTLLGYSLSEHSLIKRIINIFDVCLRKYYNNISLWLQYFNFCFIK---KKYDEL 191
+ ++ LQ SLS+ S+ +RI I+ K+ ++ W Y N+ + Y ++
Sbjct: 70 RCKRILQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKI 129
Query: 192 ENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTRMLYLRAILFIPDSIYLNILYFHFE 251
N LK H N IW+ Y Y + N R ++ + F PD L Y FE
Sbjct: 130 HNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFE 189
Query: 252 CDVFIKLLNNYK 263
+ KL+N K
Sbjct: 190 LNFITKLINRRK 201
Score = 45.4 bits (106), Expect = 8e-09
Identities = 44/228 (19%), Positives = 83/228 (36%), Gaps = 29/228 (12%)
Query: 1 MDKVCKIIENMVYEFNDLKRKELFSDKEIIAIANKRRHHEYRINSPTSVLLHFILYLEFE 60
M K +E + E +DL K LF+ E+ I KR E+R+NS S + +I Y+ +E
Sbjct: 1 MSKTRYYLEQCIPEMDDLVEKGLFTKNEVSLIMKKRTDFEHRLNSRGSSINDYIKYINYE 60
Query: 61 MNLXXXXXXXXXXXXXXXXXXXLQNKNLIKNHYKEFSILKNKMEEEKRFDXXXXXXXXXX 120
N+ L + ++ + + NK ++ +F
Sbjct: 61 SNVNKLRAKRCKRILQVKKTNSLSDWSIQQRIGFIYQRGTNKFPQDLKF----------- 109
Query: 121 XXXXXXXXXXXXVLKVEKKLQTLLGYSLSEHSLIKRIINIFDVCLRKYYNNISLWLQYFN 180
L K Y K+I NI++ L+ + N+ +W+
Sbjct: 110 ---------WAMYLNYMKARGNQTSY--------KKIHNIYNQLLKLHPTNVDIWISCAK 152
Query: 181 FCF-IKKKYDELENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTR 227
+ + + + N N L+++ +W Y+ + N +I R
Sbjct: 153 YEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFELNFITKLINRR 200
Score = 22.3 bits (46), Expect = 0.074
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 39/120 (32%)
Query: 158 INIFDVCLR---KYY--------------NNISLWLQYFNFCFIK-----KKYDEL---- 191
+ IFDVC++ K+Y NI L + N+ F + K +DE
Sbjct: 271 LTIFDVCMKTLGKHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDEFLDLE 330
Query: 192 ENAILNSLKYHIKNELIWLIYLFYFYNIKKNIIQTRMLYLRAILFIPDSIYLNILYFHFE 251
+ ++N + KN++ Y +++K++ + LYL+ ++ I LNI Y E
Sbjct: 331 RDYLINHVLQFWKNDM-------YDLSLRKDLPE---LYLKTVMI---DITLNIRYMPVE 377
Score = 20.4 bits (41), Expect = 0.28
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 428 DKYGLDVIIFLIKKYMSTLSKDKSKLHIFVFLLLNTLLKIEKNSWIKMYTKQYDDFKQVV 487
+K +D + +KKY + +SK S V L N +++++K + DD + +
Sbjct: 377 EKLDIDQLQLSVKKYFAYISKLDS---ASVKSLKNEYRSYLQDNYLKKMNAE-DDPRYKI 432
Query: 488 LDSINS 493
LD I S
Sbjct: 433 LDLIIS 438
Score = 17.7 bits (34), Expect = 1.8
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 709 KLNFITHVCLMEKNHSEISSNNYLFSYDKTNKNKDILSSILYFFLYNPKNLVQKVS---D 765
+LNFIT + K I+ KN K+ +Q S
Sbjct: 189 ELNFITKLINRRKVMGLINEREQELDMQNEQKNNQAPD--------EEKSHLQVPSTGDS 240
Query: 766 QKAKINEIKEQNIS 779
K K+NE+ E +IS
Sbjct: 241 MKDKLNELPEADIS 254
Score = 17.3 bits (33), Expect = 2.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 518 FFEDEEFTILKDQYYKTSMEKIENKNIYNI 547
F +D +F + Y K + K I+NI
Sbjct: 103 FPQDLKFWAMYLNYMKARGNQTSYKKIHNI 132
Score = 17.3 bits (33), Expect = 2.4
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 433 DVIIFLIKKYMSTLSKDKSKLHIFVFLLLNTLLKIEKN--------SWIKMYTKQYDDFK 484
D+ + + M TL K H + + ++ + IE N S Y K +D+F
Sbjct: 268 DIALTIFDVCMKTLGKHYINKHKGYYAISDSKMNIELNKETLNYLFSESLRYIKLFDEFL 327
Query: 485 QVVLDSINSCKFEQPFLYYYFFIETCVNSCYFDFFEDEEFTILKDQYYKTSM-------- 536
+ D + I + D ++ L + Y KT M
Sbjct: 328 DLERD---------------YLINHVLQFWKNDMYDLSLRKDLPELYLKTVMIDITLNIR 372
Query: 537 ----EKIENKNIY-NIEKYFKY 553
EK++ + +++KYF Y
Sbjct: 373 YMPVEKLDIDQLQLSVKKYFAY 394
Score = 15.8 bits (29), Expect = 7.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 504 YFFIETCVNSCYFDFFEDEEFTILKDQYYK 533
YF + ++S ++E + L+D Y K
Sbjct: 391 YFAYISKLDSASVKSLKNEYRSYLQDNYLK 420
Score = 15.4 bits (28), Expect = 9.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 418 NNIYSVIKEEDKYGLDVIIFLIKKYMSTLSKDKSKLHIF 456
+NIY+ + + +D+ I K + KS +IF
Sbjct: 130 HNIYNQLLKLHPTNVDIWISCAKYEYEVHANFKSCRNIF 168
Lambda K H
0.322 0.138 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1057
Number of extensions: 65
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1011
Length of database: 440
Length adjustment: 38
Effective length of query: 973
Effective length of database: 402
Effective search space: 391146
Effective search space used: 391146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)