>YDR194C MSS116 SGDID:S000002602, Chr IV from 847942-845948, reverse
           complement, Verified ORF, "DEAD-box protein required for
           efficient splicing of mitochondrial Group I and II
           introns; presumed RNA helicase due to DEAD-box motif"
          Length = 664

 Score =  174 bits (440), Expect = 1e-47
 Identities = 117/415 (28%), Positives = 211/415 (50%), Gaps = 29/415 (6%)

Query: 129 NKNVHMNDQNEQNKHCYNKLLIESCCHIDKDVKKSLLEIFQYKEFTDVQRIVYDNIIKEK 188
           +K +H+  ++   +   + LL E    +DK++ K++  + ++   T VQ+     I+  +
Sbjct: 88  SKLIHVPKEDNSKEVTLDSLLEEGV--LDKEIHKAITRM-EFPGLTPVQQKTIKPILSSE 144

Query: 189 KQNDLLIQAKTGTGKTIAYLLLSINDIIKNKILS---VHTLIIVPTRELANQIYNECKLL 245
             +D++ +AKTGTGKT A+L+     +I  K  S   V  +I+ PTR+LA QI  E K +
Sbjct: 145 -DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKI 203

Query: 246 LTYKHNIN---VLTLTGGIKRRDDQLNIRRIKPDIIICTVGRLLDHFESTYLFNTLFENL 302
               + +     ++L GG   R     + +++P+I+I T GRL+D  E     N  F  +
Sbjct: 204 HDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK--YSNKFFRFV 261

Query: 303 KMLIIDEADQLLSTGYENDIHRLLTYL-------PSNRRNILLSATLGYNLDEIRKK-MC 354
              ++DEAD+LL  G+ +D+  +   L         N + +L SATL   + ++    M 
Sbjct: 262 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN 321

Query: 355 KSDYIYLNCVKDISKHTSDQLIQYVLFHKAIDTTIILYNLLIEHMRLN----QFTYKIIV 410
           K + ++L+ V        +++ Q V+  +    +I      +EH++         YK I+
Sbjct: 322 KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFA---AVEHIKKQIKERDSNYKAII 378

Query: 411 FFPTARATSFYAQFFINQLK--ISVYEIHRKKEMAHRQITANRFSMESVGILFTSDISSR 468
           F PT + TSF      N+ K  + + E H K     R     RF  +  GIL  +D+ +R
Sbjct: 379 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGAR 438

Query: 469 GLNYPDITLIIQVNTPISREQYIHRVGRTARSNKKGMAIILLNEADELFYQEIKD 523
           G+++P++  ++Q+  P     YIHR+GRTARS K+G +++ + + +  F +E++D
Sbjct: 439 GMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 493

 Score = 15.8 bits (29), Expect = 6.6
 Identities = 4/9 (44%), Positives = 8/9 (88%)

Query: 533 NYTLKNTNL 541
           NY+ +N+N+
Sbjct: 655 NYSSRNSNI 663

Lambda     K      H
   0.321    0.137    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 982
Number of extensions: 46
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 630
Length of database: 664
Length adjustment: 38
Effective length of query: 592
Effective length of database: 626
Effective search space:   370592
Effective search space used:   370592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.9 bits)
S2: 28 (15.4 bits)