>YLR016C PML1 SGDID:S000004006, Chr XII from 177415-176801, reverse
           complement, Verified ORF, "Subunit of the RES complex,
           which is required for nuclear retention of unspliced
           pre-mRNAs; acts in the same pathway as Pml39p and Mlp1p"
          Length = 204

 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 28/155 (18%)

Query: 416 FNPSGLLAQEKIYKNGIEMKYTESIDAEKPDK-------------KWRLYMFKDSNNNE- 461
           F+PSGLL  E   K GI +K+ E  DA  PD               + L +++ ++ ++ 
Sbjct: 32  FSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKG 91

Query: 462 PQKILHIHDKSYYLIGKEQ--------------LAVDIQLNNISISKQHAVIQFKKHESK 507
           P K   ++ +S YL+G+E               +  DI +   + SKQH VIQF+     
Sbjct: 92  PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGI 151

Query: 508 ILPFLLDLNSTNGTYINNEKIQPNKYYELRETDII 542
           +  +++DL+S+NGT +NN  I   +Y ELR  D++
Sbjct: 152 LKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVL 186

Lambda     K      H
   0.306    0.125    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 281
Number of extensions: 14
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 204
Length adjustment: 28
Effective length of query: 533
Effective length of database: 176
Effective search space:    93808
Effective search space used:    93808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.1 bits)
S2: 23 (13.5 bits)