Query= PF13_0051 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) snornp
protein gar1 homologue, putative
(209 letters)
>YHR089C GAR1 SGDID:S000001131, Chr VIII from 283300-282683, reverse
complement, Verified ORF, "Protein component of the
H/ACA snoRNP pseudouridylase complex, involved in the
modification and cleavage of the 18S pre-rRNA"
Length = 205
Score = 81.6 bits (200), Expect = 9e-21
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 49 VPYFNGRIFLENKEEIGKVDEILGPINEFYFSVKLKEGIRAKSFSSDTHFFIDKSQTLPL 108
+PYFN I+LENK ++GKVDEILGP+NE +F++K +G++A SF F+I + LP+
Sbjct: 60 IPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADKLLPI 119
Query: 109 SRFLPQ 114
RFLP+
Sbjct: 120 ERFLPK 125
Lambda K H
0.324 0.143 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 205
Length adjustment: 21
Effective length of query: 188
Effective length of database: 184
Effective search space: 34592
Effective search space used: 34592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.7 bits)
S2: 19 (11.9 bits)