>YDR120C TRM1 SGDID:S000002527, Chr IV from 693257-691545, reverse
           complement, Verified ORF, "tRNA methyltransferase,
           localizes to both the nucleus and mitochondrion to
           produce the modified base N2,N2-dimethylguanosine in
           tRNAs in both compartments"
          Length = 570

 Score = 72.4 bits (176), Expect = 7e-17
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 309 FDIIDIDPYGSSIEYLESCLKYGRSNFFILITNTDMRILNGK-FPDVSFYKYNSMIFSNK 367
           F +ID+DPYG+   ++++ ++       +L+T TD+ +L G  +P+  F  Y     +N 
Sbjct: 207 FHVIDLDPYGTVTPFVDAAIQSIEEGGLMLVTCTDLSVLAGNGYPEKCFALYGG---ANM 263

Query: 368 VNYNN--EFSIRVLFYXXXXXXXXXXXXXXPFISINIDFYIRLLVHVIDDALQTKDVCID 425
           V++ +  E ++R++                P +S++IDFY+R+ V V    ++ K+V   
Sbjct: 264 VSHESTHESALRLVLNLLKQTAAKYKKTVEPLLSLSIDFYVRVFVKVKTSPIEVKNVMSS 323

Query: 426 TGMVYQCNNCSSFHINPM 443
           T   Y C+ C S+H  P+
Sbjct: 324 TMTTYHCSRCGSYHNQPL 341

 Score = 58.9 bits (141), Expect = 7e-13
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 3/145 (2%)

Query: 546 HNEAGGDANQN-CKNAFTSYKYKSTK-LNISKICEECGGDILIGGPIYIGKLHNEDFLHT 603
           HN+  G  +Q   +N  T  KY   +   +   C+ C G   + GP+Y G LHN++F+  
Sbjct: 337 HNQPLGRISQREGRNNKTFTKYSVAQGPPVDTKCKFCEGTYHLAGPMYAGPLHNKEFIEE 396

Query: 604 CISLLENLEQYNLNTIKTRERILINFRCLKQEI-NIPLYYNLPSLFRNFKICSFSRKLLV 662
            + + +   +   +T  TR+RI       K E+ + P Y++   +    K+     K +V
Sbjct: 397 VLRINKEEHRDQDDTYGTRKRIEGMLSLAKNELSDSPFYFSPNHIASVIKLQVPPLKKVV 456

Query: 663 NALLNLNYEVSYFHKDPDSVKTNAP 687
             L +L +E S  H  P S+KTNAP
Sbjct: 457 AGLGSLGFECSLTHAQPSSLKTNAP 481

 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 46/175 (26%)

Query: 53  IYEGSVKIK-NKKNHIFYNKAQVFNRDMSIVLI------------------KALXXXXXX 93
           + EG  +I   KK  +FYN  Q FNRD+S+  I                  K+       
Sbjct: 45  VKEGKAEILFPKKETVFYNPIQQFNRDLSVTCIKAWDNLYGEECGQKRNNKKSKKKRCAE 104

Query: 94  XXXXXXXXXXRG-----------------FNIIELLSASGMRSIRYAKELEDTINHITTN 136
                      G                  NI+E LSA+G+R+IRYA E+   +  +  N
Sbjct: 105 TNDDSSKRQKMGNGSPKEAVGNSNRNEPYINILEALSATGLRAIRYAHEIPH-VREVIAN 163

Query: 137 DIDKYACKQIKRNFIRNNIKKEKYTILCNDANSVMNILNVDNMYIKKRNNKKLDI 191
           D+   A + IKRN   N+++      L +DAN +        MY  K  N K  +
Sbjct: 164 DLLPEAVESIKRNVEYNSVENIVKPNL-DDANVL--------MYRNKATNNKFHV 209

 Score = 18.9 bits (37), Expect = 0.85
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 788 ENPEPFWGP 796
           ENP   WGP
Sbjct: 555 ENPTKNWGP 563

 Score = 17.7 bits (34), Expect = 1.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 597 NEDFLHTCISLLENL 611
           N D   TCI   +NL
Sbjct: 69  NRDLSVTCIKAWDNL 83

Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1028
Number of extensions: 63
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 8
Length of query: 804
Length of database: 570
Length adjustment: 39
Effective length of query: 765
Effective length of database: 531
Effective search space:   406215
Effective search space used:   406215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.8 bits)
S2: 28 (15.4 bits)