Query= PF13_0129 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ribosomal
protein L6 homologue, putative
(190 letters)
>YGL147C RPL9A SGDID:S000003115, Chr VII from 228334-227759, reverse
complement, Verified ORF, "Protein component of the
large (60S) ribosomal subunit, nearly identical to
Rpl9Bp and has similarity to E. coli L6 and rat L9
ribosomal proteins"
Length = 191
Score = 160 bits (405), Expect = 1e-44
Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 5/192 (2%)
Query: 1 MKTIVSTQKVLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLK-KYIKVVMW 59
MK I + Q++ +PEGV V+I +R V V G GTL ++ +H ID+ K+ + IKV +
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKH--IDVTFTKVNNQLIKVAVH 58
Query: 60 FGVPDSLACIRTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTR--IEIRNYL 117
G +A +RTV + + NM TGVTK + YKMR V+AHFPIN NIV+ + IE+RN+L
Sbjct: 59 NGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFL 118
Query: 118 GEKSVRFVKALPGVVIEKSPNVKDEIYVSGADIENVSLTAALIHQSVLCRNKDIRKFLDG 177
G+K +R V GV IE S NVKDEI +SG +E+VS AA + Q RNKDIRKFLDG
Sbjct: 119 GDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDG 178
Query: 178 IYVSEVTTVEKD 189
IYVS + +D
Sbjct: 179 IYVSHKGFITED 190
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 132
Number of extensions: 8
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 191
Length adjustment: 20
Effective length of query: 170
Effective length of database: 171
Effective search space: 29070
Effective search space used: 29070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.2 bits)
S2: 18 (11.5 bits)