Query= PF13_0156 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) proteasome
subunit beta type 7 precursor, putative
(270 letters)
>YOR157C PUP1 SGDID:S000005683, Chr XV from 631752-630967, reverse
complement, Verified ORF, "Endopeptidase with
trypsin-like activity that cleaves after basic residues;
beta-type subunit of 20S proteasome synthesized as a
proprotein before being proteolytically processed for
assembly into 20S particle; human homolog is subunit Z"
Length = 261
Score = 226 bits (576), Expect = 4e-64
Identities = 121/246 (49%), Positives = 160/246 (65%), Gaps = 4/246 (1%)
Query: 15 GYNFDNLKRNEILKEKGVKFPQFRKTGTTICGLVCQNAVILGADTRATEGPIVADKNCSK 74
G +FDN +RN L E P+ TGTTI G+ N V++ ADTR+T+GPIVADKNC+K
Sbjct: 3 GLSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK 62
Query: 75 LHYISKNIWCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVSMCVSRLTQELFKYQGY 134
LH IS IWCAGAG A D E T + N+ELH L T+ +PRV + L Q LFKYQG+
Sbjct: 63 LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGH 122
Query: 135 KVCAIVLGGVDVNGPQLYGIHPHGSSCLLPFTALGSGSLNAMAVLEAKYRDNMTIEEGKN 194
+++ GVD G L+ IH HGS+ + + +LGSGSL AMAVLE+ ++ ++T EE
Sbjct: 123 IGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 182
Query: 195 LVCEAICAGIFNDLGSGGNVDICV--ITKDSYQHIRPYKEPNMRLYHLPHPTIYPKGTTP 252
L +AI AGI+NDLGSG NVD+CV I KD+ +++R Y PN+R +P+GTT
Sbjct: 183 LASDAIQAGIWNDLGSGSNVDVCVMEIGKDA-EYLRNYLTPNVR-EEKQKSYKFPRGTTA 240
Query: 253 ILSEKI 258
+L E I
Sbjct: 241 VLKESI 246
Score = 13.9 bits (24), Expect = 3.9
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 110 NTNTQPRVSMCVSRLTQELFKYQGYKVCAIVLGGVDV 146
N + + S R T + K +C I VD+
Sbjct: 223 NVREEKQKSYKFPRGTTAVLKESIVNICDIQEEQVDI 259
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 261
Number of extensions: 11
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 261
Length adjustment: 25
Effective length of query: 245
Effective length of database: 236
Effective search space: 57820
Effective search space used: 57820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)