Query= PF13_0171 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
protein L23, putative
(139 letters)
>YBL087C RPL23A SGDID:S000000183, Chr II from
60735-60694,60189-59818, reverse complement, Verified
ORF, "Protein component of the large (60S) ribosomal
subunit, identical to Rpl23Bp and has similarity to E.
coli L14 and rat L23 ribosomal proteins"
Length = 137
Score = 200 bits (509), Expect = 6e-57
Identities = 93/133 (69%), Positives = 114/133 (85%)
Query: 7 GTLKNKMRITLSLPVGALINCCDNSGGKNLYIIAVQGFGSCLNRLPAASLGDMVLATVKK 66
G K RI+L LPVGA++NC DNSG +NLYIIAV+G GS LNRLPAASLGDMV+ATVKK
Sbjct: 5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKK 64
Query: 67 GKPDLRKKVLNAIICRQSKAWRRHEGYYIYFEDNAGVIVNPKGEMKGSAITGPVARECAE 126
GKP+LRKKV+ AI+ RQ+K+WRR +G ++YFEDNAGVI NPKGEMKGSAITGPV +ECA+
Sbjct: 65 GKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECAD 124
Query: 127 LWPKLSSAASAIV 139
LWP+++S + +V
Sbjct: 125 LWPRVASNSGVVV 137
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 137
Length adjustment: 15
Effective length of query: 124
Effective length of database: 122
Effective search space: 15128
Effective search space used: 15128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 16 (10.3 bits)
S2: 16 (10.8 bits)