>YBR215W HPC2 SGDID:S000000419, Chr II from 653441-655312, Verified
           ORF, "Highly charged, basic protein required for normal
           cell-cycle regulation of histone gene transcription;
           mutants display strong synthetic defects with subunits
           of FACT, a complex that allows RNA Pol II to elongate
           through nucleosomes"
          Length = 623

 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 27/171 (15%)

Query: 790 TIAKTSTDETNMSNTKNEEGTKPKFSIFKKDTPLNKKEDSAKVSKFAKISKTVLNKNDME 849
           +I+  +  ++N+S++K     K K S     + +  K  + K SK     K   N +D  
Sbjct: 303 SISSVTNSDSNISSSKKPTSEKAKKS--SSASAILPKPTTTKTSK-----KAASNSSDST 355

Query: 850 QNKIAEGSKANDVAMKKETTAKGEIVSEKKKTSKGSMFSFFKLRHSKVENEGDTTKVGEV 909
           + K A     +  A+KKE+ A  ++ + KK+ S     S  K    + +  G++T   E 
Sbjct: 356 RKKNASNKTTS--AIKKESNAGSKLNTVKKENSS---LSSIKATEKEKDKGGNST---EA 407

Query: 910 QKGVSETQKKEVGNKAIEKDVSKMIKLPIQKKEAPSITSQDSVESEELKSR 960
           +   S  +K+               K P +   AP+++    +++ E K++
Sbjct: 408 KNSTSNVRKEPTA------------KSPKRLVAAPTVSPPKILQTAETKAK 446

 Score = 26.2 bits (56), Expect = 0.007
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 482 RMVSQGVVSKSNVDMSKKMNDIKISTKGKVGFQKSAVLSKVIVEKTPLESKMKTSAPIQR 541
           R +S    S SN+  SKK      S K K     SA+L K    KT  +     S+   R
Sbjct: 302 RSISSVTNSDSNISSSKK----PTSEKAKKSSSASAILPKPTTTKTS-KKAASNSSDSTR 356

Query: 542 GKRVSFKT 549
            K  S KT
Sbjct: 357 KKNASNKT 364

 Score = 21.6 bits (44), Expect = 0.18
 Identities = 9/42 (21%), Positives = 24/42 (57%)

Query: 834 KFAKISKTVLNKNDMEQNKIAEGSKANDVAMKKETTAKGEIV 875
           K+   SK +    D ++N + + S  ++ +++KE   +G+++
Sbjct: 482 KYHPKSKELAQLKDSKRNLLMQLSDHSNGSLEKEKDEEGDVI 523

 Score = 18.5 bits (36), Expect = 1.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 461 KSILPAQLFKNV----KHTQYNTTGRMVSQGVVSKSNVDMSKKMNDIKISTKGKVGFQKS 516
           K ILP Q          H   NT G ++++   + S V++     D++ + +    F KS
Sbjct: 231 KVILPTQNMDGTIAKDPHLGDNTPGILIAK---TSSPVNL-----DVESTAQSLGKFNKS 282

Query: 517 AVLSKVIVEKTPLE 530
               K  + K P E
Sbjct: 283 TNSLKAALTKAPAE 296

 Score = 16.9 bits (32), Expect = 4.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)

Query: 708 SNSIEQKLDDEKKMISMGKSIEMK 731
           + S+E++ D+E  +I +    +M+
Sbjct: 509 NGSLEKEKDEEGDVIELDDDEDME 532

 Score = 16.2 bits (30), Expect = 7.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 793 KTSTDETNMSNTKNEEGTKPKFSIFKKD 820
           +T+T  T +S  K     K K  I K D
Sbjct: 541 ETNTVTTTISPKKKSHPMKGKNLIGKYD 568

Lambda     K      H
   0.310    0.128    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1550
Number of extensions: 89
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 1001
Length of database: 623
Length adjustment: 41
Effective length of query: 960
Effective length of database: 582
Effective search space:   558720
Effective search space used:   558720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 29 (16.0 bits)
S2: 29 (15.8 bits)