Query= PF13_0177 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP-dependent RNA helicase, putative (490 letters)
>FBgn0032919 type=protein;
           loc=2L:join(21143306..21143503,21143564..21143822,
           21144012..21145078); ID=FBpp0080997; name=CG9253-PA;
           parent=FBgn0032919,FBtr0081468;
           dbxref=FlyBase:FBpp0080997,
           FlyBase_Annotation_IDs:CG9253-PA,GB_protein:AAF53963.1,
           GB_protein:AAF53963;
           MD5=83cfae77a795bb55176cfd0864682226; release=r5.1;
           species=Dmel; length=507;
          Length = 507

 Score =  243 bits (621), Expect = 9e-69
 Identities = 149/433 (34%), Positives = 235/433 (54%), Gaps = 17/433 (3%)

Query: 54  LYNEEQINSYSD--QSNNITFEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVI 111
           L  E+   S  D  +   +T+++LG+ + L +    +    P+KIQ+  +P+ +QGK+VI
Sbjct: 43  LSGEDDKGSEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVI 102

Query: 112 GSSETGSGKTICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILS 171
           G +ETGSGKT  +   IL  L +N    F+L+L PTREL FQI EQF   GS IG+    
Sbjct: 103 GLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCV 162

Query: 172 CIGGFSLIEQRKSVMTKPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEADLLLQKC 231
            +GG  ++ Q   +  KPHII+ TPGR+ D LE+        K +++LV+DEAD +L   
Sbjct: 163 VVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN--LKAIKYLVMDEADRILNMD 220

Query: 232 FEDKLQNILNNLPKNYANERKTLFFSSTITNSLQLLIDTFPYNNLILXXXXXXXXXXXXL 291
           FE +L  IL  LP+    ER+T  FS+T+T  ++ L       + +             L
Sbjct: 221 FEVELDKILKVLPR----ERRTFLFSATMTKKVKKL-QRASLKDPVKVEVSNKYQTVEQL 275

Query: 292 DQRYIYVEEIAHITYLIYILKNKVNNLSGIIFTA---NSYKCELVYTVLNMLGIDNVDAM 348
            Q Y+++       YL++IL     N S +IF +   N+ K  L+   L +  I     +
Sbjct: 276 QQSYLFIPVKYKDVYLVHILNELAGN-SFMIFCSTCNNTVKTALMLRALGLAAI----PL 330

Query: 349 HSSKDQKNRFATLAKFKNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGR 408
           H    Q  R A L KFK     IL++TD+ SRG+DIP +  V+NFD P  +  YIHRVGR
Sbjct: 331 HGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGR 390

Query: 409 TARANRKGLAISFIDKKDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIM 468
           TARA R G AI+ + + D+  + ++++++  +L  Y   + EV+    ++    + A++ 
Sbjct: 391 TARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLE 450

Query: 469 LEEKKDIKRENER 481
           L++ +D +  ++R
Sbjct: 451 LKDLEDTRGGHKR 463
Lambda     K      H
   0.324    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 478
Number of extensions: 19
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 507
Length adjustment: 34
Effective length of query: 456
Effective length of database: 473
Effective search space:   215688
Effective search space used:   215688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (15.0 bits)
S2: 26 (14.6 bits)