>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
           complement, Verified ORF, "Protein involved in rRNA
           processing; required for maturation of the 35S primary
           transcript of pre-rRNA and for cleavage leading to
           mature 18S rRNA; homologous to eIF-4a, which is a DEAD
           box RNA-dependent ATPase with helicase activity"
          Length = 501

 Score =  225 bits (573), Expect = 3e-63
 Identities = 147/423 (34%), Positives = 226/423 (53%), Gaps = 11/423 (2%)

Query: 61  NSYSDQSNNITFEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETGSGK 120
           N+  D+S   +F EL +   LI+  K+++   PT IQ   +P  ++G ++IG ++TGSGK
Sbjct: 73  NTNEDESFE-SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK 131

Query: 121 TICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSLIE 180
           T  +   IL  L  +    ++ IL PTREL  QI E F   GS +GV     +GG ++++
Sbjct: 132 TAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 181 QRKSVMTKPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEADLLLQKCFEDKLQNIL 240
           Q + +M KPHII+ TPGR+ D LE++       ++L+FLV+DEAD LL   F   L  IL
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRIL 249

Query: 241 NNLPKNYANERKTLFFSSTITNSLQLLIDTFPYNNLILXXXXXXXXXXXXLDQRYIYVEE 300
             +P     ER T  FS+T+T+ +  L       N +             L Q  + V  
Sbjct: 250 KIIP---TQERTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG 305

Query: 301 IAHITYLIYILKNKVNNLSGIIFTANSYKCELVYTVLNMLGIDNVDAMHSSKDQKNRFAT 360
               TYLIY+L N+    + IIFT      E +  + N+L   +  A+H   +Q  R  +
Sbjct: 306 GLKNTYLIYLL-NEFIGKTMIIFTRTKANAERLSGLCNLLEF-SATALHGDLNQNQRMGS 363

Query: 361 LAKFKNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGRTARANRKGLAIS 420
           L  FK G   ILVATD+ +RG+DIP +  V+N+D P D+  YIHRVGRTARA R G +IS
Sbjct: 364 LDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSIS 423

Query: 421 FIDKKDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIMLEEKKDIKRENE 480
            + + D+    +++ ++  KL   +++K  +L     + +     E+++E  +  K +  
Sbjct: 424 LVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKA--NGEVVMEMNRRNKEKIA 481

Query: 481 RLK 483
           R K
Sbjct: 482 RGK 484

 Score = 17.7 bits (34), Expect = 1.00
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 419 ISFIDKKDVNSFNQVKNIMKDKLKPYTL-NKKEVLENMFKIGRVIKKAEIMLEEKKDIKR 477
           +S I K+     N     + +K++   L N+K+++E   + G      E    EKK + +
Sbjct: 1   MSKIVKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLK 60

Query: 478 ENER 481
              +
Sbjct: 61  SKSK 64

 Score = 15.0 bits (27), Expect = 6.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 1   MIICARTKKPSLRFCKL 17
           MII  RTK  + R   L
Sbjct: 324 MIIFTRTKANAERLSGL 340

Lambda     K      H
   0.324    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 503
Number of extensions: 25
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 490
Length of database: 501
Length adjustment: 34
Effective length of query: 456
Effective length of database: 467
Effective search space:   212952
Effective search space used:   212952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (15.0 bits)
S2: 26 (14.6 bits)