Query= PF13_0177 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP-dependent
RNA helicase, putative
(490 letters)
>YHR065C RRP3 SGDID:S000001107, Chr VIII from 229039-227534, reverse
complement, Verified ORF, "Protein involved in rRNA
processing; required for maturation of the 35S primary
transcript of pre-rRNA and for cleavage leading to
mature 18S rRNA; homologous to eIF-4a, which is a DEAD
box RNA-dependent ATPase with helicase activity"
Length = 501
Score = 225 bits (573), Expect = 3e-63
Identities = 147/423 (34%), Positives = 226/423 (53%), Gaps = 11/423 (2%)
Query: 61 NSYSDQSNNITFEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETGSGK 120
N+ D+S +F EL + LI+ K+++ PT IQ +P ++G ++IG ++TGSGK
Sbjct: 73 NTNEDESFE-SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGK 131
Query: 121 TICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSLIE 180
T + IL L + ++ IL PTREL QI E F GS +GV +GG ++++
Sbjct: 132 TAAFAIPILNRLWHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191
Query: 181 QRKSVMTKPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEADLLLQKCFEDKLQNIL 240
Q + +M KPHII+ TPGR+ D LE++ ++L+FLV+DEAD LL F L IL
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFS--LRKLKFLVMDEADRLLDMEFGPVLDRIL 249
Query: 241 NNLPKNYANERKTLFFSSTITNSLQLLIDTFPYNNLILXXXXXXXXXXXXLDQRYIYVEE 300
+P ER T FS+T+T+ + L N + L Q + V
Sbjct: 250 KIIP---TQERTTYLFSATMTSKIDKL-QRASLTNPVKCAVSNKYQTVDTLVQTLMVVPG 305
Query: 301 IAHITYLIYILKNKVNNLSGIIFTANSYKCELVYTVLNMLGIDNVDAMHSSKDQKNRFAT 360
TYLIY+L N+ + IIFT E + + N+L + A+H +Q R +
Sbjct: 306 GLKNTYLIYLL-NEFIGKTMIIFTRTKANAERLSGLCNLLEF-SATALHGDLNQNQRMGS 363
Query: 361 LAKFKNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGRTARANRKGLAIS 420
L FK G ILVATD+ +RG+DIP + V+N+D P D+ YIHRVGRTARA R G +IS
Sbjct: 364 LDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSIS 423
Query: 421 FIDKKDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIMLEEKKDIKRENE 480
+ + D+ +++ ++ KL +++K +L + + E+++E + K +
Sbjct: 424 LVSQYDLELILRIEEVLGKKLPKESVDKNIILTLRDSVDKA--NGEVVMEMNRRNKEKIA 481
Query: 481 RLK 483
R K
Sbjct: 482 RGK 484
Score = 17.7 bits (34), Expect = 1.00
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 419 ISFIDKKDVNSFNQVKNIMKDKLKPYTL-NKKEVLENMFKIGRVIKKAEIMLEEKKDIKR 477
+S I K+ N + +K++ L N+K+++E + G E EKK + +
Sbjct: 1 MSKIVKRKEKKANDELTSLAEKIRAKALENQKKLIEAEKEGGSESDSEEDATAEKKKVLK 60
Query: 478 ENER 481
+
Sbjct: 61 SKSK 64
Score = 15.0 bits (27), Expect = 6.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1 MIICARTKKPSLRFCKL 17
MII RTK + R L
Sbjct: 324 MIIFTRTKANAERLSGL 340
Lambda K H
0.324 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 503
Number of extensions: 25
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 490
Length of database: 501
Length adjustment: 34
Effective length of query: 456
Effective length of database: 467
Effective search space: 212952
Effective search space used: 212952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 26 (15.0 bits)
S2: 26 (14.6 bits)