Query= PF13_0177 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP-dependent
RNA helicase, putative
(490 letters)
>YHR169W DBP8 SGDID:S000001212, Chr VIII from 442182-443477,
Verified ORF, "Putative ATP-dependent RNA helicase of
the DEAD-box family involved in biogenesis of the 40S
ribosomal subunit"
Length = 431
Score = 237 bits (604), Expect = 7e-67
Identities = 146/419 (34%), Positives = 228/419 (54%), Gaps = 30/419 (7%)
Query: 72 FEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETGSGKTICYCWSILQE 131
F+ LG+ WL + +++ I PT IQ+ C+P I++G++ IG ++TGSGKTI + +L +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 132 LNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSLIEQRKSVMTKPHI 191
+++ G+F ++L PTREL QI EQF GS + + + +GG S+++Q + KPH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 192 IVGTPGRIS-DILESSIDIQNCFKRLRFLVLDEADLLLQKCFEDKLQNILNNLPKNYANE 250
I+ TPGR++ I+ S D R ++LVLDEAD+LL F D L ++ LP ++
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK--DK 181
Query: 251 RKTLFFSSTITNSLQLLIDT---------FPYNNLILXXXXXXXXXXXXLDQRYIYVEEI 301
R+TL F++TIT+ ++ L + F Y L YI V E
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQ----VESVDNVAIPSTLKIEYILVPEH 237
Query: 302 AHITYLIYILK-NKVNNLSGIIFTANSYKCELVYTVLNMLGIDNVDAMHSSKDQKNRFAT 360
YL +L + N + IIF + E++ L L + V ++HS Q+ R +
Sbjct: 238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEV-RVASLHSQMPQQERTNS 296
Query: 361 LAKFKNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGRTARANRKGLAIS 420
L +F+ +IL+ATD+ SRG+DIP + V+N+D P+D +IHR GRTARA R G AIS
Sbjct: 297 LHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAIS 356
Query: 421 FIDKKDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIMLEEKKDIKREN 479
F+ ++DV+ +++ +NKK N VI+KA L + KRE+
Sbjct: 357 FVTQRDVSRIQAIED---------RINKKMTETNKVHDTAVIRKA---LTKVTKAKRES 403
Lambda K H
0.324 0.140 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 15
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 431
Length adjustment: 33
Effective length of query: 457
Effective length of database: 398
Effective search space: 181886
Effective search space used: 181886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.5 bits)
S2: 25 (14.2 bits)