Query= PF13_0177 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP-dependent RNA helicase, putative (490 letters)
>YHR169W DBP8 SGDID:S000001212, Chr VIII from 442182-443477,
           Verified ORF, "Putative ATP-dependent RNA helicase of
           the DEAD-box family involved in biogenesis of the 40S
           ribosomal subunit"
          Length = 431

 Score =  237 bits (604), Expect = 7e-67
 Identities = 146/419 (34%), Positives = 228/419 (54%), Gaps = 30/419 (7%)

Query: 72  FEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETGSGKTICYCWSILQE 131
           F+ LG+  WL +  +++ I  PT IQ+ C+P I++G++ IG ++TGSGKTI +   +L +
Sbjct: 4   FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63

Query: 132 LNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFSLIEQRKSVMTKPHI 191
            +++  G+F ++L PTREL  QI EQF   GS + + +   +GG S+++Q   +  KPH 
Sbjct: 64  WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123

Query: 192 IVGTPGRIS-DILESSIDIQNCFKRLRFLVLDEADLLLQKCFEDKLQNILNNLPKNYANE 250
           I+ TPGR++  I+ S  D      R ++LVLDEAD+LL   F D L   ++ LP    ++
Sbjct: 124 IIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPK--DK 181

Query: 251 RKTLFFSSTITNSLQLLIDT---------FPYNNLILXXXXXXXXXXXXLDQRYIYVEEI 301
           R+TL F++TIT+ ++ L +          F Y                 L   YI V E 
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQ----VESVDNVAIPSTLKIEYILVPEH 237

Query: 302 AHITYLIYILK-NKVNNLSGIIFTANSYKCELVYTVLNMLGIDNVDAMHSSKDQKNRFAT 360
               YL  +L   +  N + IIF   +   E++   L  L +  V ++HS   Q+ R  +
Sbjct: 238 VKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEV-RVASLHSQMPQQERTNS 296

Query: 361 LAKFKNGLCKILVATDIISRGIDIPKISFVINFDFPNDTVQYIHRVGRTARANRKGLAIS 420
           L +F+    +IL+ATD+ SRG+DIP +  V+N+D P+D   +IHR GRTARA R G AIS
Sbjct: 297 LHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAIS 356

Query: 421 FIDKKDVNSFNQVKNIMKDKLKPYTLNKKEVLENMFKIGRVIKKAEIMLEEKKDIKREN 479
           F+ ++DV+    +++          +NKK    N      VI+KA   L +    KRE+
Sbjct: 357 FVTQRDVSRIQAIED---------RINKKMTETNKVHDTAVIRKA---LTKVTKAKRES 403
Lambda     K      H
   0.324    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 15
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 431
Length adjustment: 33
Effective length of query: 457
Effective length of database: 398
Effective search space:   181886
Effective search space used:   181886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.5 bits)
S2: 25 (14.2 bits)