Query= PF13_0179 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding)
isoleucine--tRNA ligase, putative
(1272 letters)
>YBL076C ILS1 SGDID:S000000172, Chr II from 84259-81041, reverse
complement, Verified ORF, "Cytoplasmic isoleucine-tRNA
synthetase, target of the G1-specific inhibitor
reveromycin A"
Length = 1072
Score = 711 bits (1836), Expect = 0.0
Identities = 387/883 (43%), Positives = 550/883 (62%), Gaps = 46/883 (5%)
Query: 391 EVFAWTTTPWTLPSNLALCVNEHFIYLRVYHIESQRMFIFAECRLEWIMKELKWNVENIK 450
++ AWTTTPWTLPSNL+LCVN F Y+++Y R FI E ++ + K+ K E K
Sbjct: 218 QLVAWTTTPWTLPSNLSLCVNADFEYVKIYDETRDRYFILLESLIKTLYKKPK--NEKYK 275
Query: 451 IVNRFLGSELKELKYKPLFTNFYEKHNFKERAYKIIADDFVSDDAGTGIVHCAPSYGEDD 510
IV + GS+L LKY+PLF F E+ F E A+++I+DD+V+ D+GTGIVH AP++GE+D
Sbjct: 276 IVEKIKGSDLVGLKYEPLFPYFAEQ--FHETAFRVISDDYVTSDSGTGIVHNAPAFGEED 333
Query: 511 YRVCCKYGIIDPESNILIDPLDWNGYFTNEVEELKDMYIKDADNVIKKKLKENNRLMSNN 570
C K G+I E ++L + +D G FT +V + + +Y+KDAD +I K L L+ +
Sbjct: 334 NAACLKNGVIS-EDSVLPNAIDDLGRFTKDVPDFEGVYVKDADKLIIKYLTNTGNLLLAS 392
Query: 571 TIVHSYPFCWRSDTPLIYRAIPAWFVRVSNSTNKLVENNETTYWIPAHVKEKKFHNWIKD 630
I HSYPFCWRSDTPL+YR++PAWFVRV N +++++ ++W+P +KEK+F NWI +
Sbjct: 393 QIRHSYPFCWRSDTPLLYRSVPAWFVRVKNIVPQMLDSVMKSHWVPNTIKEKRFANWIAN 452
Query: 631 AKDWCISRNRYWGTPIPIWCDEKMETVICVESIKHLEELSGIKNINDLHRHYIDNIEI-- 688
A+DW +SRNRYWGTPIP+W + E V+CV SIK LEEL+G++NI DLHR ID + I
Sbjct: 453 ARDWNVSRNRYWGTPIPLWVSDDFEEVVCVGSIKELEELTGVRNITDLHRDVIDKLTIPS 512
Query: 689 KNPKGDTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTETNDFHKIFPADFIAEGLDQTR 748
K KGD LKRI EVFDCWFESGSMPYA HYPF T F + PA+FI+EGLDQTR
Sbjct: 513 KQGKGD----LKRIEEVFDCWFESGSMPYASQHYPFE-NTEKFDERVPANFISEGLDQTR 567
Query: 749 GWFYTLLVISTLLFNKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILNKYGADSLRL 808
GWFYTL V+ T LF P+KN+I +G+VLA+DG+KMSK LKNYPDP +LNKYGAD+LRL
Sbjct: 568 GWFYTLAVLGTHLFGSVPYKNVIVSGIVLAADGRKMSKSLKNYPDPSIVLNKYGADALRL 627
Query: 809 YLINSVAVRAENLKFQEKGVNEIVKSFILPYYHSFRFFSQEVTRYETTNKMQFLFNTDYI 868
YLINS ++AE+LKF+E+GV E+V +LP+++SF+F ++ + + + F + D
Sbjct: 628 YLINSPVLKAESLKFKEEGVKEVVSKVLLPWWNSFKFLDGQIALLKKMSNIDFQY--DDS 685
Query: 869 YKNDNIMDQWIFSSLQSLINSVHTEMKAYKLYNVLPKLLNFIENLTNWYIRLNRDRMRGM 928
K+DN+MD+WI +S+QSL+ +H EM YKLY V+PKLLNFI+ LTNWYIR NR R++G
Sbjct: 686 VKSDNVMDRWILASMQSLVQFIHEEMGQYKLYTVVPKLLNFIDELTNWYIRFNRRRLKGE 745
Query: 929 LGKENTHQSLNVLCRTLYLFTIIMAPFTPFISEYIYQFLKNIKYXXXXXXXXXXXXXXXX 988
G E+ ++LN L L+ F MAPFTPF+SE IY LK +Y
Sbjct: 746 NGVEDCLKALNSLFDALFTFVRAMAPFTPFLSESIYLRLK--EYIPEAVLAKYGKDG--- 800
Query: 989 XXXXDLNRNDIHKSVHFIMLPQVDDKYIIKYEFIE-LIEHMKDVILLGRNLREKRKTPNK 1047
+SVHF+ P V +Y E IE + M+ VI LGRN+REK+ K
Sbjct: 801 ------------RSVHFLSYPVVKKEYF--DEAIETAVSRMQSVIDLGRNIREKKTISLK 846
Query: 1048 KPLKSLTILHKNESFFKHFDRISNYIKEELNILNVEYSNDIS--CLNFSAIPNFKKLGVK 1105
PLK+L ILH +ES+ K + + NYI EELN+ +V ++D + + + A+ ++ LG K
Sbjct: 847 TPLKTLVILHSDESYLKDVEALKNYIIEELNVRDVVITSDEAKYGVEYKAVADWPVLGKK 906
Query: 1106 LGYXXXXXXXXXXXXXAEDIKLFQQNKQIIIDNILLEQDDI--IIQMNHNIQNDNTEAIS 1163
L +E ++ + ++ ++ + I L + D+ I + + E +
Sbjct: 907 LKKDAKKVKDALPSVTSEQVREYLESGKLEVAGIELVKGDLNAIRGLPESAVQAGQETRT 966
Query: 1164 NNYITILMDFTADQQLENMASAREICNHIQKIRKNLSLNQNSPVLMHIYIYDQT--FKNH 1221
+ + I+MD +L++ ARE+ N IQK+RK L VL+ + T F+
Sbjct: 967 DQDVLIIMDTNIYSELKSEGLARELVNRIQKLRKKCGLEATDDVLVEYELVKDTIDFEAI 1026
Query: 1222 MLNENEYIKKCLRRNLNIIDLEK------DVQNLTDKFFEEKI 1258
+ + + K R ++ D K + Q++ D F+ K+
Sbjct: 1027 VKEHFDMLSKTCRSDIAKYDGSKTDPIGDEEQSINDTIFKLKV 1069
Score = 241 bits (615), Expect = 3e-67
Identities = 103/198 (52%), Positives = 138/198 (69%)
Query: 96 EEEERILKYWEDIDAFNLSNELSKNKKPYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYF 155
+EEE++L W++IDAF+ S EL+K+K + F+DGPPFATG PHYGH+LA IKD V RY
Sbjct: 12 KEEEKVLSLWDEIDAFHTSLELTKDKPEFSFFDGPPFATGTPHYGHILASTIKDIVPRYA 71
Query: 156 YQSNFYVERRFGWDCHGLPVEYXXXXXXXXXXREDILNMGIDVYNEKCRGIVLKYSKEWV 215
+ +VERRFGWD HG+P+E+ ++D+ G++ YN +CR IV+ Y+ +W
Sbjct: 72 TMTGHHVERRFGWDTHGVPIEHIIDKKLGITGKDDVFKYGLENYNNECRSIVMTYASDWR 131
Query: 216 ATVQRIGRWIDFKNDYKTMDKSFMESVWWVFSELYKNNYIYKSFKVMPYSCKCNTPISNF 275
T+ R+GRWIDF NDYKTM SFMES WW F +L++ +Y+ FKVMPYS TP+SNF
Sbjct: 132 KTIGRLGRWIDFDNDYKTMYPSFMESTWWAFKQLHEKGQVYRGFKVMPYSTGLTTPLSNF 191
Query: 276 ELNLNYKDTPDPSIIISF 293
E NYKD DP++ I F
Sbjct: 192 EAQQNYKDVNDPAVTIGF 209
Score = 20.0 bits (40), Expect = 1.2
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 863 FNTDYIYKNDNIMDQ--WIFSSLQSLINSVHTEMKAYKLYNVLPKLLNFIENLTNWYIRL 920
F+ DY + M+ W F L H + + Y+ + V+P L+N+ +
Sbjct: 143 FDNDYKTMYPSFMESTWWAFKQL-------HEKGQVYRGFKVMPYSTGLTTPLSNFEAQQ 195
Query: 921 N 921
N
Sbjct: 196 N 196
Score = 20.0 bits (40), Expect = 1.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 276 ELNLNYKDTPDPSIIIS 292
+++ + K+ PDPSI+++
Sbjct: 602 KMSKSLKNYPDPSIVLN 618
Score = 18.5 bits (36), Expect = 3.4
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 189 EDILNMGIDVYNEKCRGIVLKY 210
E I+ D+ ++ CR + KY
Sbjct: 1024 EAIVKEHFDMLSKTCRSDIAKY 1045
Score = 18.1 bits (35), Expect = 4.5
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 225 IDFKNDYKT-----MDKSFMESVWWVFSELYKNNYIYKSFKVMPYSCKCNTPISNFELNL 279
IDF+ D MD+ + S+ + +++ YK + V+P ++N+ +
Sbjct: 678 IDFQYDDSVKSDNVMDRWILASMQSLVQFIHEEMGQYKLYTVVPKLLNFIDELTNWYIRF 737
Query: 280 N 280
N
Sbjct: 738 N 738
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3574
Number of extensions: 183
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 1272
Length of database: 1072
Length adjustment: 47
Effective length of query: 1225
Effective length of database: 1025
Effective search space: 1255625
Effective search space used: 1255625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 33 (18.2 bits)
S2: 33 (17.3 bits)