Query= PF13_0182 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(1838 letters)
>YKL210W UBA1 SGDID:S000001693, Chr XI from 39164-42238, Verified ORF,
"Ubiquitin activating enzyme, involved in
ubiquitin-mediated protein degradation and essential for
viability"
Length = 1024
Score = 95.1 bits (235), Expect = 4e-23
Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 32/295 (10%)
Query: 793 GCVQVVDYDYIEESNLSRQFLFRTKDINKLKCQIACENIKMINDDINCDFLKMKVDDTIF 852
G + V D D IE+SNL+RQFLFR KD+ K K ++A E + +N D LK K++ I
Sbjct: 464 GYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPD-----LKGKINAKI- 517
Query: 853 DNKDFLLKRYLLFTNKKNEIVKKQKTKNIRENPLICILCLDNLKSRILMDKFCLLNSIPL 912
+K ++ + E+ LDN+ +R +D+ C+ PL
Sbjct: 518 --------------DKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPL 563
Query: 913 IESGIEGLKASSQVVYPFCSETYXXXXXXXXXXXXLFDEEKSNSCTITSFPRNHKHIIEF 972
+ESG G K ++QV+ P +E+Y E+ CT+ SFP H I +
Sbjct: 564 LESGTLGTKGNTQVIIPRLTESYSSSRDP--------PEKSIPLCTLRSFPNKIDHTIAW 615
Query: 973 AKSVYNNMFYENVVKMNKFINDPLYFLGELCKYENILDVXXXXXXXXXXXXXXXXXXXSN 1032
AKS++ F ++ +N ++ P + L + ++ V
Sbjct: 616 AKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKW 675
Query: 1033 IQTLWNSIFVHNILNLL----KNSKQEEIVQYFDSLHKLPQPIYFNKDNKYHINF 1083
+ + F H+I LL K++K ++ + P P+ F+ N H +F
Sbjct: 676 ARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHF 730
Score = 67.0 bits (162), Expect = 1e-14
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 612 EKKDISNEIINQFCSCAHIELSPFSFFWGALLSQQILKGITHKFKPIHQMFYYDRRDLFP 671
E D++ ++I + A ++ F+G L++Q++LK + KF P+ Q Y+D + P
Sbjct: 339 EGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLP 398
Query: 672 F-------SNISKMYYGKYMHEKNFFGEEFHKFLKKLNILLIGSGALGCEFLKLLAISGV 724
++ +Y ++ FG +F K + + L+GSGA+GCE LK A+ G+
Sbjct: 399 DPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGL 458
Query: 725 SSNMD 729
S D
Sbjct: 459 GSGSD 463
Score = 57.4 bits (137), Expect = 9e-12
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 7/156 (4%)
Query: 166 EKKYSRQIYTHGYNEEXXXXXXXXXXXXLNGISCEICKNLSLCGVHEIGIYDNNLLTYED 225
E YSRQ+Y G L G+ EI KN+ L GV + ++D + D
Sbjct: 16 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLAD 75
Query: 226 IDNLYLCNKKLVNEQIKSISCVDNIQKLNESCKIKAITTNLYDNILNYD----IVVTVNQ 281
+ + +K + ++ ++ + +LN + + + D++ +V T
Sbjct: 76 LSTQFFLTEKDIGQKRGDVTRA-KLAELNAYVPVNVLDS--LDDVTQLSQFQVVVATDTV 132
Query: 282 KTNFNIKLNNYCRENKKKFICVNTCGLFGRVFIDYG 317
+K+N +C + +FI T GLFG F+D G
Sbjct: 133 SLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLG 168
Score = 38.9 bits (89), Expect = 3e-06
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 1277 LESNKDD-----INFIYSVTNIRCENYNFKKLNMFDFLKISNNIIPSIVTIVSMISALAF 1331
++ KDD I FI + +N R +NY + + I+ IIP+I T S+++ L
Sbjct: 819 VDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVN 878
Query: 1332 FEMYKIV 1338
E+YK++
Sbjct: 879 LELYKLI 885
Score = 26.9 bits (58), Expect = 0.013
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 683 YMHEKNFFGEEFHKFLKKLNILLIGSGALGCEFLKLLAISGVSS 726
Y + G+E ++ N+L++G LG E K + ++GV S
Sbjct: 19 YSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKS 62
Score = 24.6 bits (52), Expect = 0.067
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 1060 YFDSLHKLPQPIYFNKDNK 1078
YFDSL LP P F ++ K
Sbjct: 390 YFDSLESLPDPKNFPRNEK 408
Score = 24.3 bits (51), Expect = 0.087
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 1435 NKNLFYFFNANYEKLKEKSKVIYNQYVNLEDDFITISELKNVDTWTY 1481
N +L NA +K+ +++ I+N DF+T + L NVD TY
Sbjct: 506 NPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVT-NALDNVDARTY 551
Score = 21.6 bits (44), Expect = 0.57
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 797 VVDYDYIEESNLSRQFLFRTKDINKLKCQIACENIKMIN 835
V D + ++ ++LS QF KDI + + + + +N
Sbjct: 65 VFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELN 103
Score = 21.2 bits (43), Expect = 0.74
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 1272 PLIYNLESNKDDINFIYSVTNIRCENYNFK 1301
PL +++ +N D +F+ + ++R NY K
Sbjct: 717 PLEFDIYNN-DHFHFVVAGASLRAYNYGIK 745
Score = 20.4 bits (41), Expect = 1.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 261 AITTNLYDNILNYDIVVTVNQKTNFNIKLNNY 292
A TT+L ++N ++ ++ KT+ N +
Sbjct: 867 ATTTSLVTGLVNLELYKLIDNKTDIEQYKNGF 898
Score = 20.4 bits (41), Expect = 1.3
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 1740 NITLNELVESIEIVFNVNIQTICVQDKIIYSKFNIPSFKLYNHKYLYDILCDIFKNDKKF 1799
+I L++L+E E + I + ++Y+ F P KL L I + K
Sbjct: 936 DIKLSDLIEHFEKDEGLEITMLSYGVSLLYASF-FPPKKLKERLNL-----PITQLVKLV 989
Query: 1800 QARELP---RTFILSIYAYDKLTNKEVVLPDVQVNV 1832
+++P T IL I A DK ++V +P + +++
Sbjct: 990 TKKDIPAHVSTMILEICADDK-EGEDVEVPFITIHL 1024
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3758
Number of extensions: 214
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 1838
Length of database: 1024
Length adjustment: 49
Effective length of query: 1789
Effective length of database: 975
Effective search space: 1744275
Effective search space used: 1744275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 34 (18.6 bits)
S2: 34 (17.7 bits)