>YDR324C UTP4 SGDID:S000002732, Chr IV from 1116759-1114429, reverse
           complement, Verified ORF, "Nucleolar protein, component
           of the small subunit (SSU) processome containing the U3
           snoRNA that is involved in processing of pre-18S rRNA"
          Length = 776

 Score = 53.9 bits (128), Expect = 6e-11
 Identities = 29/109 (26%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 487 YVLLGSENSRIYKYNLS-NNKYIGEFVSMNK-------NCIIWDVIYIYKTDEVICVDNN 538
           +V+ G  + RI  ++   N++ +G  +   K       + ++W VIY+ +TD++   D+ 
Sbjct: 200 FVIGGCSDGRIRIWSAQKNDENMGRLLHTMKVDKAKKESTLVWSVIYLPRTDQIASGDST 259

Query: 539 GSLIIFDNENYSIKYHFNNHNYKCISLSKSFNEDYLFSAGVDRHIIKYT 587
           GS+  +D +  ++   F  H+   + L+   + +Y+FSAGVDR I +++
Sbjct: 260 GSIKFWDFQFATLNQSFKAHDADVLCLTTDTDNNYVFSAGVDRKIFQFS 308

 Score = 24.3 bits (51), Expect = 0.047
 Identities = 15/71 (21%), Positives = 32/71 (45%)

Query: 128 NIDINDYILGISTICGSIIFYDINSKNIIYKIITNASISSCKLNNSLEYFGICNLNGYFY 187
           +++++  I  IS  CG +   D+ ++        N  I++  +N S +   +   +   Y
Sbjct: 533 HLEVDQNIAVISRGCGVVDILDLKARISKPLARLNNFITAVHINTSRKSVVVITADNKIY 592

Query: 188 LFNIYKNEEGK 198
            FN+  N E +
Sbjct: 593 EFNMNLNSEAE 603

 Score = 19.6 bits (39), Expect = 1.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 1304 RENNIIVFICVPKNIDNTLIHVADTKKYTMSM 1335
            R NN I  + +  +  + ++  AD K Y  +M
Sbjct: 565  RLNNFITAVHINTSRKSVVVITADNKIYEFNM 596

 Score = 19.2 bits (38), Expect = 1.5
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 485 NHYVLLGSENSRIYKYNLSNNK 506
           N+YV     + +I++++ + NK
Sbjct: 292 NNYVFSAGVDRKIFQFSQNTNK 313

 Score = 18.9 bits (37), Expect = 2.0
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 829 NMKIYNYDISKLN-FFRVYDFDFLNNDTLIVSMIRLNYD-DMSKNMNSYNISQNLNHTNM 886
           ++K +++  + LN  F+ +D D L     + +    NY      +   +  SQN N +  
Sbjct: 261 SIKFWDFQFATLNQSFKAHDADVL----CLTTDTDNNYVFSAGVDRKIFQFSQNTNKSQK 316

Query: 887 NN 888
           NN
Sbjct: 317 NN 318

 Score = 18.5 bits (36), Expect = 2.6
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 519 IIWDVIYIYKTDEVICVDNNGSLIIFD 545
           +IW +      D++    +NG++++ D
Sbjct: 143 VIWSISINDSQDKLSVGCDNGTVVLID 169

 Score = 18.1 bits (35), Expect = 3.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)

Query: 744 IYYNNNYDVEKNINEKKQTYE 764
           I ++ ++ + K   +KK+T+E
Sbjct: 657 IDFDVDFPINKRRKQKKRTHE 677

 Score = 17.3 bits (33), Expect = 5.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 1124 ADGLCNKTDNNIHGDEIDNISKNVKQSTHNT 1154
            AD LC  TD + +      + + + Q + NT
Sbjct: 281  ADVLCLTTDTDNNYVFSAGVDRKIFQFSQNT 311

 Score = 17.3 bits (33), Expect = 5.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 748 NNYDVEKNINEKKQTYEKDKSDNKQIE 774
           NN+    +IN  +++     +DNK  E
Sbjct: 567 NNFITAVHINTSRKSVVVITADNKIYE 593

 Score = 17.3 bits (33), Expect = 5.8
 Identities = 5/18 (27%), Positives = 15/18 (83%)

Query: 488 VLLGSENSRIYKYNLSNN 505
           V++ + +++IY++N++ N
Sbjct: 582 VVVITADNKIYEFNMNLN 599

Lambda     K      H
   0.321    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2318
Number of extensions: 150
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 1335
Length of database: 776
Length adjustment: 45
Effective length of query: 1290
Effective length of database: 731
Effective search space:   942990
Effective search space used:   942990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.2 bits)
S2: 31 (16.5 bits)