Query= PF13_0213 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal
subunit protein L6e, putative
(221 letters)
>YML073C RPL6A SGDID:S000004538, Chr XIII from
124172-124158,123742-123227, reverse complement,
Verified ORF, "N-terminally acetylated protein component
of the large (60S) ribosomal subunit, has similarity to
Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S
rRNA"
Length = 176
Score = 74.7 bits (182), Expect = 1e-18
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 27/181 (14%)
Query: 42 KKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDS 101
+K +KLR S+ G V I+L G+ GKR + K L L + GP+++NGVPL+RV++
Sbjct: 22 RKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNA 81
Query: 102 RYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIXXXXXXXXXXXXEA-LFMN 160
RY++ TST + + ++ + F +E EA LF
Sbjct: 82 RYVIATSTKV---------------SVEGVNVEKF--NVEYFAKEKLTKKEKKEANLFPE 124
Query: 161 NVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMK 220
+IK R ED KV + L EI K + YL + F+L+N H +K
Sbjct: 125 QQNKEIKAERVEDQKV---------VDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLK 175
Query: 221 F 221
F
Sbjct: 176 F 176
Score = 18.1 bits (35), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 11 YNVKGKKKVLVP-VNAKKTINKKYFGRKVASKKK 43
Y + KV V VN +K N +YF ++ +KK+
Sbjct: 83 YVIATSTKVSVEGVNVEK-FNVEYFAKEKLTKKE 115
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 176
Length adjustment: 20
Effective length of query: 201
Effective length of database: 156
Effective search space: 31356
Effective search space used: 31356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)