Query= PF13_0213 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) 60S ribosomal subunit protein L6e, putative (221 letters)
>YML073C RPL6A SGDID:S000004538, Chr XIII from
           124172-124158,123742-123227, reverse complement,
           Verified ORF, "N-terminally acetylated protein component
           of the large (60S) ribosomal subunit, has similarity to
           Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S
           rRNA"
          Length = 176

 Score = 74.7 bits (182), Expect = 1e-18
 Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 27/181 (14%)

Query: 42  KKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDS 101
           +K    +KLR S+  G V I+L G+  GKR +  K L    L + GP+++NGVPL+RV++
Sbjct: 22  RKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNA 81

Query: 102 RYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIXXXXXXXXXXXXEA-LFMN 160
           RY++ TST +                 + ++ + F   +E             EA LF  
Sbjct: 82  RYVIATSTKV---------------SVEGVNVEKF--NVEYFAKEKLTKKEKKEANLFPE 124

Query: 161 NVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMK 220
               +IK  R ED KV         +   L  EI K  +   YL + F+L+N    H +K
Sbjct: 125 QQNKEIKAERVEDQKV---------VDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLK 175

Query: 221 F 221
           F
Sbjct: 176 F 176

 Score = 18.1 bits (35), Expect = 0.11
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 11  YNVKGKKKVLVP-VNAKKTINKKYFGRKVASKKK 43
           Y +    KV V  VN +K  N +YF ++  +KK+
Sbjct: 83  YVIATSTKVSVEGVNVEK-FNVEYFAKEKLTKKE 115
Lambda     K      H
   0.319    0.137    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 221
Length of database: 176
Length adjustment: 20
Effective length of query: 201
Effective length of database: 156
Effective search space:    31356
Effective search space used:    31356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 19 (11.6 bits)
S2: 19 (11.9 bits)