>YMR242C RPL20A SGDID:S000004855, Chr XIII from
           754196-754178,753741-753224, reverse complement,
           Verified ORF, "Protein component of the large (60S)
           ribosomal subunit, nearly identical to Rpl20Bp and has
           similarity to rat L18a ribosomal protein"
          Length = 178

 Score =  138 bits (348), Expect = 5e-38
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 4/169 (2%)

Query: 15  QYHIVGRAIPTAKDKNPNVYRMCIFAKNDTNAKSRFWYFMKKINKLKKSNGELLACEQIK 74
           +Y ++GR +PT     P ++RM IFA N+  AKSR+WYF++K++K+KK++GE+++  QI 
Sbjct: 12  EYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQIN 71

Query: 75  ERFPLRVKNYGVLLRYDSRTGTHNMYKEFRDTTKEGAIAQLYSEMAG-XXXXXXXXXXXX 133
           E  P +VKN+GV +RYDSR+GTHNMYKE RD ++  A+  LY +MA              
Sbjct: 72  EAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILK 131

Query: 134 XXXXXXXXXXXXPHIKQLLKRRLRFPALHLPTLQKEYRKKFASKRPSTY 182
                        ++KQ L + L+FP   LP   ++  K F+ KRPST+
Sbjct: 132 VAEIEKTADVKRQYVKQFLTKDLKFP---LPHRVQKSTKTFSYKRPSTF 177

 Score = 12.7 bits (21), Expect = 3.9
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 147 HIKQLLKRRLRFPALHLPTLQKEYRKKFAS 176
           H K+      R P   +P  +    + FAS
Sbjct: 9   HFKEYQVIGRRLPTESVPEPKLFRMRIFAS 38

Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 184
Length of database: 178
Length adjustment: 19
Effective length of query: 165
Effective length of database: 159
Effective search space:    26235
Effective search space used:    26235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 18 (11.2 bits)
S2: 18 (11.5 bits)