Query= PF13_0228 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal
subunit protein S6, putative
(306 letters)
>FBgn0004922 type=protein;
loc=X:complement(7793787..7794322,7794836..7795040,
7795149..7795163); ID=FBpp0071089; name=RpS6-PC;
parent=FBgn0004922,FBtr0071137;
dbxref=FlyBase:FBpp0071089,
FlyBase_Annotation_IDs:CG10944-PC,GB_protein:AAN09219.1,
GB_protein:AAN09219;
MD5=03052d03f2bdf558588e2185b989be48; release=r5.1;
species=Dmel; length=251;
Length = 251
Score = 219 bits (558), Expect = 5e-62
Identities = 113/198 (57%), Positives = 138/198 (69%), Gaps = 2/198 (1%)
Query: 3 LNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNAVPGDSIGEEFTGYVFRITGGNDKQGFP 62
LN+S P QK E+ DE KL F EKR+G V D +G+E+ GY RI GGNDKQGFP
Sbjct: 6 LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65
Query: 63 MIQGVLTNNRVRLLFKKGMKCYRPRKKGERKRKSVRGCIVGQDLSALNLTLVKKGVNEIP 122
M QGVLT+ RVRLL KKG CYRPR+ GERKRKSVRGCIV ++S L L ++KKG +IP
Sbjct: 66 MKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIP 125
Query: 123 GLTDKAVGKKLGPKRASKIRKLFNLDKSDDVRKYVIGRAI--TKNGKTKFIKPKIQRLVT 180
GLTD + ++LGPKRASKIRKL+NL K DDVR++V+ R + N K PKIQRL+T
Sbjct: 126 GLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLIT 185
Query: 181 EKRLLRKRNLLQAKEKRR 198
L RK + K+KR+
Sbjct: 186 PVVLQRKHRRIALKKKRQ 203
Lambda K H
0.317 0.137 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 207
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 251
Length adjustment: 25
Effective length of query: 281
Effective length of database: 226
Effective search space: 63506
Effective search space used: 63506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)