Query= PF13_0228 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) 40S ribosomal subunit protein S6, putative (306 letters)
>FBgn0004922 type=protein;
           loc=X:complement(7793787..7794322,7794836..7795040,
           7795149..7795163); ID=FBpp0071089; name=RpS6-PC;
           parent=FBgn0004922,FBtr0071137;
           dbxref=FlyBase:FBpp0071089,
           FlyBase_Annotation_IDs:CG10944-PC,GB_protein:AAN09219.1,
           GB_protein:AAN09219;
           MD5=03052d03f2bdf558588e2185b989be48; release=r5.1;
           species=Dmel; length=251;
          Length = 251

 Score =  219 bits (558), Expect = 5e-62
 Identities = 113/198 (57%), Positives = 138/198 (69%), Gaps = 2/198 (1%)

Query: 3   LNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNAVPGDSIGEEFTGYVFRITGGNDKQGFP 62
           LN+S P    QK  E+ DE KL  F EKR+G  V  D +G+E+ GY  RI GGNDKQGFP
Sbjct: 6   LNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFP 65

Query: 63  MIQGVLTNNRVRLLFKKGMKCYRPRKKGERKRKSVRGCIVGQDLSALNLTLVKKGVNEIP 122
           M QGVLT+ RVRLL KKG  CYRPR+ GERKRKSVRGCIV  ++S L L ++KKG  +IP
Sbjct: 66  MKQGVLTHGRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIP 125

Query: 123 GLTDKAVGKKLGPKRASKIRKLFNLDKSDDVRKYVIGRAI--TKNGKTKFIKPKIQRLVT 180
           GLTD  + ++LGPKRASKIRKL+NL K DDVR++V+ R +    N K     PKIQRL+T
Sbjct: 126 GLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPAKDNKKATSKAPKIQRLIT 185

Query: 181 EKRLLRKRNLLQAKEKRR 198
              L RK   +  K+KR+
Sbjct: 186 PVVLQRKHRRIALKKKRQ 203
Lambda     K      H
   0.317    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 207
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 251
Length adjustment: 25
Effective length of query: 281
Effective length of database: 226
Effective search space:    63506
Effective search space used:    63506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 21 (12.5 bits)
S2: 21 (12.7 bits)