Query= PF13_0256 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) hypothetical
protein
(119 letters)
>YCL037C SRO9 SGDID:S000000542, Chr III from 58678-57374, reverse
complement, Verified ORF, "Cytoplasmic RNA-binding
protein that associates with translating ribosomes;
involved in heme regulation of Hap1p as a component of
the HMC complex, also involved in the organization of
actin filaments; contains a La motif"
Length = 434
Score = 30.0 bits (66), Expect = 4e-05
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 6 ASDSSNKKKENVKFSKFVTSLSFMKKNTEHHENAKKKIKYSNDNHMWIVNEYEEAAKAYL 65
++ +SNK K N + +S + +K H NAKK+ + D V EE +K
Sbjct: 102 SNGNSNKSKNNKTAASSTSSSNANRKKKHHQHNAKKQQQMKKDGFESAVG--EEDSKDAT 159
Query: 66 KKESPQKSKK 75
+E+ Q +++
Sbjct: 160 SQENGQSTQQ 169
Lambda K H
0.307 0.122 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 159
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 434
Length adjustment: 22
Effective length of query: 97
Effective length of database: 412
Effective search space: 39964
Effective search space used: 39964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 20 (11.9 bits)
S2: 20 (12.3 bits)