Query= PF13_0261 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) ATP binding
protein, putative
(439 letters)
>YLR243W YLR243W SGDID:S000004233, Chr XII from 624205-625023,
Uncharacterized ORF, "Protein required for cell
viability"
Length = 272
Score = 108 bits (270), Expect = 2e-28
Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 26/201 (12%)
Query: 2 KYGQVVVGPAGSGKSNYCKMMKEFMKIKKRNCYVVNLDSACEEYYYERKKKPINTTYNIE 61
+ G +V+GPAG+GKS +C + M+ R ++VNLD A E YE + I+
Sbjct: 3 RVGVMVLGPAGAGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYE---------FTID 53
Query: 62 KELNXXXXXXXXXXXRNYVEVNNLMEEQNLGPNCALLRSVEILYENSXXXXXXXXXXXXX 121
R+ + ++++MEE +LGPN AL+ E L +N
Sbjct: 54 --------------IRDLISLDDVMEEMDLGPNGALIYCFEYLLKN--LDWLDEEIGDFN 97
Query: 122 XXXFIIDTPGQIELYTHTDYFKKILNIFSEQ-NIRLVIVFLIDISFISSNTKLLSAYLTS 180
I D PGQIELYTH I+ ++Q N L +L++ F+ ++K S L++
Sbjct: 98 DEYLIFDCPGQIELYTHIPVLPNIVRHLTQQLNFNLCATYLLEAPFVIDSSKFFSGALSA 157
Query: 181 LSTMINFELPHINILTKCDLL 201
+S MI ELPHIN+L+K DL+
Sbjct: 158 MSAMILLELPHINVLSKLDLI 178
Score = 53.1 bits (126), Expect = 1e-11
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 355 NYEKLNDILSLDPHDIIITA--NKCMSKKYYKLNNAFANIIEDFNLVSFLPLNIYDDDNV 412
N +KL L+ D ++ T N+ + K+ +LN AN+++DF +V FLPL + D++
Sbjct: 183 NKKKLKRFLNPDAMLLMETEGMNQASNPKFLRLNQCIANLVDDFGMVQFLPLESNNPDSI 242
Query: 413 DFIINSIDMIIQYG---EDKDVNDNYDM 437
+ I++ +D I Q+ E K+ ND D+
Sbjct: 243 ETILSYVDDITQWAEGQEQKEPNDQIDV 270
Score = 16.9 bits (32), Expect = 0.80
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 413 DFIINSIDMIIQYGEDKDVNDNYDMF 438
++++ ++D + + E D ND Y +F
Sbjct: 80 EYLLKNLDWLDE--EIGDFNDEYLIF 103
Score = 15.0 bits (27), Expect = 3.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 81 EVNNLMEEQNLGPNCALLRSVE 102
++N ++ L P+ LL E
Sbjct: 181 DINKKKLKRFLNPDAMLLMETE 202
Lambda K H
0.318 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 257
Number of extensions: 15
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 439
Length of database: 272
Length adjustment: 29
Effective length of query: 410
Effective length of database: 243
Effective search space: 99630
Effective search space used: 99630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 23 (13.4 bits)
S2: 23 (13.5 bits)