Query= PF13_0262 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) lysine--tRNA
ligase
(583 letters)
>YDR037W KRS1 SGDID:S000002444, Chr IV from 525436-527211, Verified
ORF, "Lysyl-tRNA synthetase; also identified as a
negative regulator of general control of amino acid
biosynthesis "
Length = 591
Score = 483 bits (1243), Expect = e-141
Identities = 247/514 (48%), Positives = 355/514 (69%), Gaps = 13/514 (2%)
Query: 78 VDPRLYFENRSKFIQD-QKDKGINPYPHKFERTISIPEFIEKYKDLGNGEHLEDTILNIT 136
+DP YFE RS+ IQ+ +K NPYPHKF +IS PEF+ KY L GE L + ++I
Sbjct: 68 LDPSQYFETRSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIA 127
Query: 137 GRIMRVSASGQKLRFFDLVGDGEKIQVLANYSFHNHEKGNFAECYDKIRRGDIVGIVGFP 196
GRI SG KL+F+ L GDG ++Q+++ + + ++ + +D ++RGDIVG+ G+
Sbjct: 128 GRIHAKRESGSKLKFYVLHGDGVEVQLMSQLQDYC-DPDSYEKDHDLLKRGDIVGVEGYV 186
Query: 197 GKSK-----KGELSIFPKETILLSACLHMLPMK-YGLKDTEIRYRQRYLDLLINESSRHT 250
G+++ +GE+S+F LL+ CLHMLP +G KD E RYR+RYLDL++N+ +R+
Sbjct: 187 GRTQPKKGGEGEVSVFVSRVQLLTPCLHMLPADHFGFKDQETRYRKRYLDLIMNKDARNR 246
Query: 251 FVTRTKIINFLRNFLNERGFFEVETPMMNLIAGGANARPFITHHNDLDLDLYLRIATELP 310
F+TR++II ++R FL++R F EVETPMMN+IAGGA A+PFITHHNDLD+D+Y+RIA EL
Sbjct: 247 FITRSEIIRYIRRFLDQRKFIEVETPMMNVIAGGATAKPFITHHNDLDMDMYMRIAPELF 306
Query: 311 LKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADYNDLIKWSEDFFSQLVY 370
LK L+VGG+D+VYEIG+ FRNEGID THNPEFT+CEFY AYAD DL+ +E FS++V
Sbjct: 307 LKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDMTELMFSEMVK 366
Query: 371 HLFGTYKISYNKDGPE-NQPIEIDFTPPYPKVSIVEEIEKVTNTILE--QPFDSNETIEK 427
+ G+Y I Y+ D + + +E++F+ P+ +++++EE+EKV N + ET E
Sbjct: 367 EITGSYIIKYHPDPADPAKELELNFSRPWKRINMIEELEKVFNVKFPSGDQLHTAETGEF 426
Query: 428 MINIIKEHKIELPNPPTAAKLLDQLASHFIENKYNDKPFFIVEHPQIMSPLAKYHRTKPG 487
+ I+ ++K+E P P T A++LD+L + N P FI HPQ+MSPLAKY R +PG
Sbjct: 427 LKKILVDNKLECPPPLTNARMLDKLVGELEDTCIN--PTFIFGHPQMMSPLAKYSRDQPG 484
Query: 488 LTERLEMFICGKEVLNAYTELNDPFKQKECFKLQQKDREKGDTEAAQLDSAFCTSLEYXX 547
L ER E+F+ KE+ NAYTELNDPF Q+ F+ Q + +++GD EA +D FC +LEY
Sbjct: 485 LCERFEVFVATKEICNAYTELNDPFDQRARFEEQARQKDQGDDEAQLVDETFCNALEYGL 544
Query: 548 XXXXXXXXXIDRITMFLTNKNSIKDVILFPTMRP 581
IDR+ MFLT+ N+I++V+LFPT++P
Sbjct: 545 PPTGGWGCGIDRLAMFLTDSNTIREVLLFPTLKP 578
Score = 15.8 bits (29), Expect = 5.4
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 332 EGIDNTHNPEFT 343
EG+ N H E T
Sbjct: 12 EGVANLHLDEAT 23
Lambda K H
0.320 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 892
Number of extensions: 34
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 583
Length of database: 591
Length adjustment: 37
Effective length of query: 546
Effective length of database: 554
Effective search space: 302484
Effective search space used: 302484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 27 (15.3 bits)
S2: 27 (15.0 bits)