Query= PF13_0286 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding)
methyltransferase, putative
(1019 letters)
>YCL054W SPB1 SGDID:S000000559, Chr III from 31449-33974, Verified
ORF, "AdoMet-dependent methyltransferase involved in
rRNA processing and 60S ribosomal subunit maturation;
methylates G2922 in the putative tRNA docking site of
the large subunit rRNA and in the absence of snR52,
U2921; suppressor of PAB1 mutants"
Length = 841
Score = 228 bits (580), Expect = 2e-63
Identities = 159/444 (35%), Positives = 230/444 (51%), Gaps = 71/444 (15%)
Query: 1 MGK-KKKVGKERIDKYYKLAKTAGYRARSAFKLIQIAQKFNVF-KNANILIDLCAAPGGW 58
MGK +KK K R+D+YY LAK GYRARS+FK+IQI +K+ F + + ++IDLCAAPG W
Sbjct: 1 MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60
Query: 59 LQVAYKNMSKQSTIIGVDLVPIRKIDDNVITIKSDITTSDCXXXXXXXXXMDKADVILND 118
QVA K S IIGVD+VP++ + NVIT +SDITT DC KAD +L+D
Sbjct: 61 CQVASKLCPVNSLIIGVDIVPMKPMP-NVITFQSDITTEDCRSKLRGYMKTWKADTVLHD 119
Query: 119 GAPNVGTTYSYDSFNQNVLVLNSIKIAYIFLKKNGIFITKVFRNEEYISLIWVLEKLFGD 178
GAPNVG + D+F Q+ L L ++K+A L NG F+TK+FR+++Y LIWV ++LF
Sbjct: 120 GAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEK 179
Query: 179 VKHIKPRSSREISSEIYLVGLNFLG-KKVDKKLFDYTYIFSDQFKKNSNKSSLLETKQES 237
V+ KP +SR +S+EI++V F K++D +L D +F + N ES
Sbjct: 180 VEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEELPDGQQN--------MES 231
Query: 238 YLDNNENYFSDEESNXXXXXXXXXXXXXXXXXXXXXXXXXXXNRQGYDVGDD--YRATDI 295
+ N E RQGY+ GD+ Y T I
Sbjct: 232 KIYNPEK--------------------------------KVRKRQGYEEGDNLLYHETSI 259
Query: 296 CTFIKSDNYVDLLIKNNKFTFDKNYKNNSDPMIKTIYECIYKNECTTKEIFFLCNDLKVL 355
F+++++ + +L + NKFT D+N ++ + K + TT E DLKVL
Sbjct: 260 LDFVRTEDPISMLGEMNKFTIDENDHE---------WKILKKLKQTTDEFRSCIEDLKVL 310
Query: 356 GKSDLYNLIKWRYKIKKSVLNQTSKKNNLDFDNHDVEQTTQELSDVKESSQID-DFNTIV 414
GK D +++WR KI + +L K D +T E+ + E QI+ D
Sbjct: 311 GKKDFKMILRWR-KIAREILGIEVK---------DDAKTEIEVVPLTEEEQIEKDL---- 356
Query: 415 DKNISENELDNTSDEATEKDEKDQ 438
+ + E + N E K+E Q
Sbjct: 357 -QGLQEKQRLNVKRERRRKNEMKQ 379
Score = 85.9 bits (211), Expect = 1e-20
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 786 NNEVKMKNSSFSIVKTDENAQNLNNYFS-----NLVKDED-----ELAFIKCIG---EKL 832
++E +S F IV D ++ ++ + N K E ++A ++ + +
Sbjct: 611 SDESSSDDSDFEIVANDNASEEFDSDYDSEEEKNQTKKEKHSRDIDIATVEAMTLAHQLA 670
Query: 833 IHKKSRMDLIDDSFNRYSYMEDESNLPDWFLEEEKKYRRPVIPIDKKILDEYKGKINKIT 892
+ +K++ DL+D+ FNRY++ + E NLPDWFLE+EK++ + PI K+ K KI +
Sbjct: 671 LGQKNKHDLVDEGFNRYTFRDTE-NLPDWFLEDEKEHSKINKPITKEAAMAIKEKIKAMN 729
Query: 893 KMPIKKVIEAKMRNRKREITKMKKLEAKIGKIEKNED 929
PIKKV EAK R R R + +++K++ K G I + D
Sbjct: 730 ARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDSD 766
Score = 28.5 bits (62), Expect = 0.002
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 355 LGKSDLYNLIKWRYKIKKSVLNQTSK-KNNLDFDNHDVEQTTQELSDVKESSQIDDFNTI 413
LGK L+NL + K +LN +K K + F + ++ + D E+ I D ++
Sbjct: 402 LGKESLFNL---KTAEKTGILNDLAKGKKRMIFTDDELAKDNDIYID--ENIMIKDKDSA 456
Query: 414 VDKNISENELDNT-SDEATEKDEKD 437
D + E+EL+ SD T + E+D
Sbjct: 457 ADADDLESELNAMYSDYKTRRSERD 481
Score = 25.8 bits (55), Expect = 0.013
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 381 KNNLDFDNHDVEQTTQELSDVKESSQID-DFNTIVDKNISENELDNTSDEATEKDE 435
K N + ++ Q E ESS D DF + + N SE E D+ D EK++
Sbjct: 591 KLNKKRKHEEMHQKQDEADSSDESSSDDSDFEIVANDNASE-EFDSDYDSEEEKNQ 645
Score = 22.3 bits (46), Expect = 0.15
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 382 NNLDFDNHDVEQTTQELSD-VKESSQIDDFNTIVDKNISENELDNTSDEATEKDEKDQVD 440
N+ F+N + + ++D + S + D + + +K E+ DEA DE D
Sbjct: 560 NDPIFNNVEPDLPVNTVNDGIMSSESVGDISKL-NKKRKHEEMHQKQDEADSSDESSSDD 618
Query: 441 EIEEFSA 447
E A
Sbjct: 619 SDFEIVA 625
Score = 18.5 bits (36), Expect = 2.1
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 428 DEATEKDEKDQVDEI 442
++ ++K EKD+ +EI
Sbjct: 762 NDDSDKTEKDKAEEI 776
Score = 16.9 bits (32), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 530 EKLEHLNQLKNSDLDKLE 547
EK++ L N D DK E
Sbjct: 752 EKIKKKAGLINDDSDKTE 769
Score = 16.5 bits (31), Expect = 8.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 829 GEKLIHKKSRMDLIDDSFN 847
G+ + K+RM D FN
Sbjct: 547 GDHKLSSKARMIFNDPIFN 565
Lambda K H
0.314 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2099
Number of extensions: 124
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1019
Length of database: 841
Length adjustment: 43
Effective length of query: 976
Effective length of database: 798
Effective search space: 778848
Effective search space used: 778848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.0 bits)
S2: 31 (16.5 bits)