Query= PF13_0286 Pf Annotation|Plasmodium_falciparum_Sanger|(protein coding) methyltransferase, putative (1019 letters)
>YCL054W SPB1 SGDID:S000000559, Chr III from 31449-33974, Verified
           ORF, "AdoMet-dependent methyltransferase involved in
           rRNA processing and 60S ribosomal subunit maturation;
           methylates G2922 in the putative tRNA docking site of
           the large subunit rRNA and in the absence of snR52,
           U2921; suppressor of PAB1 mutants"
          Length = 841

 Score =  228 bits (580), Expect = 2e-63
 Identities = 159/444 (35%), Positives = 230/444 (51%), Gaps = 71/444 (15%)

Query: 1   MGK-KKKVGKERIDKYYKLAKTAGYRARSAFKLIQIAQKFNVF-KNANILIDLCAAPGGW 58
           MGK +KK  K R+D+YY LAK  GYRARS+FK+IQI +K+  F + + ++IDLCAAPG W
Sbjct: 1   MGKTQKKNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSW 60

Query: 59  LQVAYKNMSKQSTIIGVDLVPIRKIDDNVITIKSDITTSDCXXXXXXXXXMDKADVILND 118
            QVA K     S IIGVD+VP++ +  NVIT +SDITT DC           KAD +L+D
Sbjct: 61  CQVASKLCPVNSLIIGVDIVPMKPMP-NVITFQSDITTEDCRSKLRGYMKTWKADTVLHD 119

Query: 119 GAPNVGTTYSYDSFNQNVLVLNSIKIAYIFLKKNGIFITKVFRNEEYISLIWVLEKLFGD 178
           GAPNVG  +  D+F Q+ L L ++K+A   L  NG F+TK+FR+++Y  LIWV ++LF  
Sbjct: 120 GAPNVGLGWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEK 179

Query: 179 VKHIKPRSSREISSEIYLVGLNFLG-KKVDKKLFDYTYIFSDQFKKNSNKSSLLETKQES 237
           V+  KP +SR +S+EI++V   F   K++D +L D   +F +      N         ES
Sbjct: 180 VEATKPPASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEELPDGQQN--------MES 231

Query: 238 YLDNNENYFSDEESNXXXXXXXXXXXXXXXXXXXXXXXXXXXNRQGYDVGDD--YRATDI 295
            + N E                                     RQGY+ GD+  Y  T I
Sbjct: 232 KIYNPEK--------------------------------KVRKRQGYEEGDNLLYHETSI 259

Query: 296 CTFIKSDNYVDLLIKNNKFTFDKNYKNNSDPMIKTIYECIYKNECTTKEIFFLCNDLKVL 355
             F+++++ + +L + NKFT D+N            ++ + K + TT E      DLKVL
Sbjct: 260 LDFVRTEDPISMLGEMNKFTIDENDHE---------WKILKKLKQTTDEFRSCIEDLKVL 310

Query: 356 GKSDLYNLIKWRYKIKKSVLNQTSKKNNLDFDNHDVEQTTQELSDVKESSQID-DFNTIV 414
           GK D   +++WR KI + +L    K         D  +T  E+  + E  QI+ D     
Sbjct: 311 GKKDFKMILRWR-KIAREILGIEVK---------DDAKTEIEVVPLTEEEQIEKDL---- 356

Query: 415 DKNISENELDNTSDEATEKDEKDQ 438
            + + E +  N   E   K+E  Q
Sbjct: 357 -QGLQEKQRLNVKRERRRKNEMKQ 379

 Score = 85.9 bits (211), Expect = 1e-20
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 14/157 (8%)

Query: 786 NNEVKMKNSSFSIVKTDENAQNLNNYFS-----NLVKDED-----ELAFIKCIG---EKL 832
           ++E    +S F IV  D  ++  ++ +      N  K E      ++A ++ +    +  
Sbjct: 611 SDESSSDDSDFEIVANDNASEEFDSDYDSEEEKNQTKKEKHSRDIDIATVEAMTLAHQLA 670

Query: 833 IHKKSRMDLIDDSFNRYSYMEDESNLPDWFLEEEKKYRRPVIPIDKKILDEYKGKINKIT 892
           + +K++ DL+D+ FNRY++ + E NLPDWFLE+EK++ +   PI K+     K KI  + 
Sbjct: 671 LGQKNKHDLVDEGFNRYTFRDTE-NLPDWFLEDEKEHSKINKPITKEAAMAIKEKIKAMN 729

Query: 893 KMPIKKVIEAKMRNRKREITKMKKLEAKIGKIEKNED 929
             PIKKV EAK R R R + +++K++ K G I  + D
Sbjct: 730 ARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDSD 766

 Score = 28.5 bits (62), Expect = 0.002
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 355 LGKSDLYNLIKWRYKIKKSVLNQTSK-KNNLDFDNHDVEQTTQELSDVKESSQIDDFNTI 413
           LGK  L+NL   +   K  +LN  +K K  + F + ++ +      D  E+  I D ++ 
Sbjct: 402 LGKESLFNL---KTAEKTGILNDLAKGKKRMIFTDDELAKDNDIYID--ENIMIKDKDSA 456

Query: 414 VDKNISENELDNT-SDEATEKDEKD 437
            D +  E+EL+   SD  T + E+D
Sbjct: 457 ADADDLESELNAMYSDYKTRRSERD 481

 Score = 25.8 bits (55), Expect = 0.013
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 381 KNNLDFDNHDVEQTTQELSDVKESSQID-DFNTIVDKNISENELDNTSDEATEKDE 435
           K N    + ++ Q   E     ESS  D DF  + + N SE E D+  D   EK++
Sbjct: 591 KLNKKRKHEEMHQKQDEADSSDESSSDDSDFEIVANDNASE-EFDSDYDSEEEKNQ 645

 Score = 22.3 bits (46), Expect = 0.15
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 382 NNLDFDNHDVEQTTQELSD-VKESSQIDDFNTIVDKNISENELDNTSDEATEKDEKDQVD 440
           N+  F+N + +     ++D +  S  + D + + +K     E+    DEA   DE    D
Sbjct: 560 NDPIFNNVEPDLPVNTVNDGIMSSESVGDISKL-NKKRKHEEMHQKQDEADSSDESSSDD 618

Query: 441 EIEEFSA 447
              E  A
Sbjct: 619 SDFEIVA 625

 Score = 18.5 bits (36), Expect = 2.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 428 DEATEKDEKDQVDEI 442
           ++ ++K EKD+ +EI
Sbjct: 762 NDDSDKTEKDKAEEI 776

 Score = 16.9 bits (32), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 530 EKLEHLNQLKNSDLDKLE 547
           EK++    L N D DK E
Sbjct: 752 EKIKKKAGLINDDSDKTE 769

 Score = 16.5 bits (31), Expect = 8.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 829 GEKLIHKKSRMDLIDDSFN 847
           G+  +  K+RM   D  FN
Sbjct: 547 GDHKLSSKARMIFNDPIFN 565
Lambda     K      H
   0.314    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2099
Number of extensions: 124
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 1019
Length of database: 841
Length adjustment: 43
Effective length of query: 976
Effective length of database: 798
Effective search space:   778848
Effective search space used:   778848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.0 bits)
S2: 31 (16.5 bits)