Query= PF13_0291 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) replication
licensing factor, putative
(929 letters)
>YGL201C MCM6 SGDID:S000003169, Chr VII from 120911-117858, reverse
complement, Verified ORF, "Protein involved in DNA
replication; component of the Mcm2-7 hexameric complex
that binds chromatin as a part of the pre-replicative
complex"
Length = 1017
Score = 489 bits (1259), Expect = e-142
Identities = 297/768 (38%), Positives = 439/768 (57%), Gaps = 75/768 (9%)
Query: 181 LAESINPIKTKEVGKICLRFYNKKNPIHSLRSLRCEMLGEMISVRGQVTRTSDVRPELTL 240
+ S +P +T+ V +I F+N +H +R +R E +G ++S+ G VTRTS+VRPEL
Sbjct: 250 ITTSTSPEQTERVFQIS--FFNLPT-VHRIRDIRSEKIGSLLSISGTVTRTSEVRPELYK 306
Query: 241 AAFKCNECGNIINGVKQQFRYTQPSKCPSASCSNMSDWSLVLEQSYFVDWQKIRLQEIAQ 300
A+F C+ C I++ V+Q F+YT+P+ CP+ SC N + W+L + +S F+DWQK+R+QE A
Sbjct: 307 ASFTCDMCRAIVDNVEQSFKYTEPTFCPNPSCENRAFWTLNVTRSRFLDWQKVRIQENAN 366
Query: 301 ESPPGSMPRNMDVILRNDIVDSVHAGDRIIVTGCLIVVPDIPTLMKPGDVPRSV--ARQL 358
E P GSMPR +DVILR D V+ GDR TG IVVPD+ L PG P S R +
Sbjct: 367 EIPTGSMPRTLDVILRGDSVERAKPGDRCKFTGVEIVVPDVTQLGLPGVKPSSTLDTRGI 426
Query: 359 LKKNENSLVSQGLTGIKGVGVQDLNHKLCIYACQIEKLNSS-------KKDNNFDEQTQV 411
K E ++ G+TG++ +GV+DL +K+ AC + + S+ NN + + Q+
Sbjct: 427 SKTTEG--LNSGVTGLRSLGVRDLTYKISFLACHVISIGSNIGASSPDANSNNRETELQM 484
Query: 412 DINCE----------------EILNCDDLKWLRDIAMHPNTIDILAECIAPKIWGNLEIK 455
N + L+ D++ L+++ + D L IAP ++G+ +K
Sbjct: 485 AANLQANNVYQDNERDQEVFLNSLSSDEINELKEMVKDEHIYDKLVRSIAPAVFGHEAVK 544
Query: 456 KGALLMMTGGVQKIT-SNCKLRGDINMCIVGDPGTAKSEILKYVESFAPRAIFTSGKGST 514
KG LL M GGV K T KLRGDIN+C+VGDP T+KS+ LKYV FAPR+++TSGK S+
Sbjct: 545 KGILLQMLGGVHKSTVEGIKLRGDINICVVGDPSTSKSQFLKYVVGFAPRSVYTSGKASS 604
Query: 515 AAGLTAAVHRDPDQGDTVLEAGALMYADQGICCIDEFDKMDEKDRVAIHEAMEQQTISIT 574
AAGLTAAV RD + GD +EAGALM AD GICCIDEFDKMD D+VAIHEAMEQQTISI
Sbjct: 605 AAGLTAAVVRDEEGGDYTIEAGALMLADNGICCIDEFDKMDISDQVAIHEAMEQQTISIA 664
Query: 575 KAGIQATLNARASVLAACNPKYGRYDTLKTFAQNVNIPAPLLSRFDLFYTMLDCIDIDKD 634
KAGI ATLNAR S+LAA NP GRY+ + N+N+ AP++SRFDLF+ +LD + D
Sbjct: 665 KAGIHATLNARTSILAAANPVGGRYNRKLSLRGNLNMTAPIMSRFDLFFVILDDCNEKID 724
Query: 635 TSIANHLVSMHCGEEAEKHLRANAGKLDSVKLEIYLELSKRVKPLLTDEAKYKLIQYYVS 694
T +A+H+V +H K A + +L Y++ ++ KP+LT EA+ L++ Y
Sbjct: 725 TELASHIVDLHM-----KRDEAIEPPFSAEQLRRYIKYARTFKPILTKEARSYLVEKYKE 779
Query: 695 FRNIEYSPGAQRSMRMTVRQLESLIRLSEAVAKLKFSHFVDVKHVEIACSIFKASMKKIS 754
R + ++ S R+TVRQLES+IRLSEA+A+ + + A + + S+ ++
Sbjct: 780 LRKDDAQGFSRSSYRITVRQLESMIRLSEAIARANCVDEITPSFIAEAYDLLRQSIIRVD 839
Query: 755 NEKEINLDEEFDKV---NNSLMGNKVNKLD-----------------QETENTEQ----N 790
+ ++ +DEEFD + +++ GN + D ++E T +
Sbjct: 840 VD-DVEMDEEFDNIESQSHAASGNNDDNDDGTGSGVITSEPPADIEEGQSEATARPGTSE 898
Query: 791 KKITTIKASEYQYISAIIFEIIKEYEFNNNNESITQDQLIETYLQVYAKAESSEQVDEWI 850
KK TT+ +Y + +I I E + E +T +++ YL + + + + W
Sbjct: 899 KKKTTVTYDKYVSMMNMIVRKIAEVD-REGAEELTAVDIVDWYL-LQKENDLGSLAEYWE 956
Query: 851 YK--LKKIINRLINQDIKLL----------SETNEDDPEKVIIRIHPN 886
+ K+I RL+ I + E E++ K + IHPN
Sbjct: 957 ERRLAFKVIKRLVKDRILMEIHGTRHNLRDLENEENENNKTVYVIHPN 1004
Score = 20.0 bits (40), Expect = 0.81
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 918 DDVDFQEEIDN 928
DDV+ EE DN
Sbjct: 841 DDVEMDEEFDN 851
Score = 17.3 bits (33), Expect = 5.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 65 VQDQNMAKVFEKFLKTF 81
V + + + FE+FL+ F
Sbjct: 106 VTGEKVREAFEQFLEDF 122
Score = 16.9 bits (32), Expect = 6.9
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 15 AHSAFGNNE 23
+H+A GNN+
Sbjct: 856 SHAASGNND 864
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1942
Number of extensions: 97
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 4
Length of query: 929
Length of database: 1017
Length adjustment: 44
Effective length of query: 885
Effective length of database: 973
Effective search space: 861105
Effective search space used: 861105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 31 (17.1 bits)
S2: 31 (16.5 bits)