Query= PF13_0304 Pf
Annotation|Plasmodium_falciparum_Sanger|(protein coding) elongation
factor 1 alpha
(443 letters)
>YBR118W TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified
ORF, "Translational elongation factor EF-1 alpha; also
encoded by TEF1; functions in the binding reaction of
aminoacyl-tRNA (AA-tRNA) to ribosomes"
Length = 458
Score = 647 bits (1670), Expect = 0.0
Identities = 310/454 (68%), Positives = 370/454 (81%), Gaps = 12/454 (2%)
Query: 1 MGKEKTHINLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVL 60
MGKEK+HIN+VVIGHVDSGKSTTTGH+IYK GGID+RTIEKFEKE+AE+GKGSFKYAWVL
Sbjct: 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVL 60
Query: 61 DKLKAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPAEV 120
DKLKAERERGITIDIALWKFETP+Y TVIDAPGH+DFIKNMITGTSQAD A+L++ V
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120
Query: 121 GGFEGAFSKEGQTKEHALLAFTLGVKQIVVGVNKMDTVKYSEDRYEEIKKEVKDYLKKVG 180
G FE SK+GQT+EHALLAFTLGV+Q++V VNKMD+VK+ E R++EI KE +++KKVG
Sbjct: 121 GEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG 180
Query: 181 YQADKVDFIPISGFEGDNLIEKSDKTPWY------------KGRTLIEALDTMEPPKRPY 228
Y V F+PISG+ GDN+IE + PWY KG+TL+EA+D +E P RP
Sbjct: 181 YNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPT 240
Query: 229 DKPLRIPLQGVYKIGGIGTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEA 288
DKPLR+PLQ VYKIGGIGTVPVGRVETG++K GMV+ FAP+ V +E KSVEMH E LE+
Sbjct: 241 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQG 300
Query: 289 RPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPVLD 348
PGDN+GFNVKNVSVKEI+RG V D KN+P KGC+ F A VI+LNHPG+I GY+PVLD
Sbjct: 301 VPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLD 360
Query: 349 CHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLG 408
CHT+HI+C+F + K D+RSGK +E++PK +KSGD+ALV P KPM VE F+EYPPLG
Sbjct: 361 CHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLG 420
Query: 409 RFAIRDMRQTIAVGIIKSVEKKEPGAVTAKAPAK 442
RFA+RDMRQT+AVG+IKSV+K E A KA K
Sbjct: 421 RFAVRDMRQTVAVGVIKSVDKTEKAAKVTKAAQK 454
Lambda K H
0.315 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 753
Number of extensions: 21
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 458
Length adjustment: 33
Effective length of query: 410
Effective length of database: 425
Effective search space: 174250
Effective search space used: 174250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 25 (14.3 bits)
S2: 25 (14.2 bits)